- Probe CUST_39653_PI390587928
- Source Contig U35_31765
Probe Details
Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
---|---|---|---|---|
CUST_39653_PI390587928 | Hv_44K_v2 | TACCTAGAGTTGATGTACCATTGCACTCAAGACCTTATGGTTTGGATGTTCCAACTGGCG | 232 | GeneList: darkgrey MasterList: None |
Probe Values
3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
---|---|---|---|---|---|---|
Normalized | 0.375 | 0.405 | 1.202 | 1.779 | 1.261 | 1.033 |
Raw | 2.897 | 6.497 | 21.953 | 53.070 | 12.650 | 11.430 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
---|---|---|---|---|---|---|---|---|
Harvest35 | U35_31765 | 388 | 3e-25 | 233 - 292 | 100 | 60 / 60 | plus |
Contig Sequence (388 bp)
>U35_31765 388 Hv_44K_v2 AAACCCCAACCCAACCCCTGCTCGCCCGCTCGCTCGCCGCCGGCCGCCGCCCCGCAACTG CGCCGACCCCCGNNCNCNCCGCGCGCCGACCCCATGGGGGATCCCTACCGACCATACGTC CCGCCCTCCTCTCACGACAGACGTCCACTGGCCAGTTATCCTGGGTATGTTCCACCTGAG GAATCATCCTATTATGCTTCAAAAATGGCTGCTCTGCGAGGAGCACCAAATATACCTAGA GTTGATGTACCATTGCACTCAAGACCTTATGGTTTGGATGTTCCAACTGGCGGGAGCCAT CCTGCTTATGGTTCGGATGTTCCAGCACGCGTGAGCCATCCTGCTTATGGTTTGGATATT CAAGCAGGCGTGAGACATCCTGCTTATG
Homology of Contig U35_31765 to Model Species (E-value threshold 1e-50)
Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
---|---|---|---|---|
Rice v7 | None | |||
Brachypodium v1_2 | None | |||
Arabidopsis v10 | None |