barSeed - Barley Seed Development Database

Probe CUST_39649_PI390587928

Source Contig U35_31767

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_39649_PI390587928	Hv_44K_v2	CACGGAAGTGATGAAACTTGTCAACAGCCTTATGAAAGCCCCAGAAATAGCTGTCACTAT	507	GeneList: purple MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	0.438	0.510	1.017	1.763	1.041	1.542
Raw	398.641	718.052	1275.957	3506.493	731.354	1172.567

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_73329.2	1081	2e-24	572 - 631	100	60 / 60	plus	ABC05731 ABC42205
MLOC	MLOC_73329.1	1181	2e-24	641 - 700	100	60 / 60	plus	ABC05731 ABC42205
JLOC1	JLOC1_48818.1	1327	8e-25	641 - 700	100	60 / 60	plus
Harvest21	ABC05732	653	3e-25	420 - 479	100	60 / 60	plus
Harvest21	ABC05731	1030	3e-25	425 - 484	100	60 / 60	plus	ABC05731
Harvest35	U35_31767	567	3e-25	508 - 567	100	60 / 60	plus
Harvest35	U35_16346	1110	3e-25	440 - 499	100	60 / 60	plus

Contig Sequence (567 bp)

>U35_31767 567 Hv_44K_v2
CTTCCCCCACTGCTCTCCGCCTCCGATCGATCCCACCGGAGCACCACCCGCCGCCGCCGG
TCGGATCGGAACGGAGCGGCGATGGAGGCGGTGAAGAACCTCCTGAAGCCGAAGCCGACG
CCGCAGCAGCAGCTGCGCGAGTGGCAGCGCCGCCTCCGCAACGAGGGCCGCAACATCGAG
CGCCAGATCCGAGACGTGCAGAAGGAGGAGAAGAAGGTGGAGAAGGCCATCCGGGAGGCC
GCCAAGCGCGGCGACATGGGATCCGCCAAGGTACCCACTTACATATACTCTGCGCTATCG
ATCGATTTGGGCGCAGACGATGCGTATCTGCGTGTGAGTTTTGGTTTTCCTCGGTTGTTG
GTGTATGAAGGCGCTGGCCAAGGAGGTGGTGCAGTCGAGGAAGGCGGTCAACCGCCTCTA
CGAGAACAAGGCCCAGCTCAACTCCATCTCCATGCACCTCGGGGAGATCGTCGCTACTAC
TAGGACGGTTGGACATTTGTCGAAGAGCACGGAAGTGATGAAACTTGTCAACAGCCTTAT
GAAAGCCCCAGAAATAGCTGTCACTAT

Homology of Contig U35_31767 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None