barSeed - Barley Seed Development Database

Probe CUST_39648_PI390587928

Source Contig U35_17474

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_39648_PI390587928	Hv_44K_v2	GCTTGCACTTGTATTGAGATGTTATTTCGCTCTGTTAACTTCAGATCATAAATTGCTTTG	1137	GeneList: green MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.353	1.263	1.234	0.939	0.347	0.230
Raw	20388.867	29842.667	25570.367	30253.250	3976.870	2879.393

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_57173.1	1230	2e-24	8 - 67	100	60 / 60	minus	ABC11093
JLOC1	JLOC1_37013.1	1266	8e-25	1148 - 1207	100	60 / 60	plus
Harvest21	ABC11093	1185	3e-25	1104 - 1163	100	60 / 60	plus	ABC11093
Harvest35	U35_17474	1290	3e-25	1138 - 1197	100	60 / 60	plus

Contig Sequence (1290 bp)

>U35_17474 1290 Hv_44K_v2
GTTCGAGCCAACCCATACAAACTCAAACCCCCACGAAAACCCCTCTCTCATCTCCGCTTC
TTCCTCGCCGCCGAAACCCTAACCTAGCCGCTCGTCGCCGCCGCCGCCGCCGCCGCCCCA
GCCGCCATGTCGAACCCCAAGGGTTCGAAAATGCTCCAGTTCGTCAACTACCGGATGCGC
GTGACCATCCAGGACGGCCGCCAACTCGTGGGGAAGTTCATGGCCTTCGATCGCCACATG
AACCTCGTCCTCGGCGACTGCGAGGAGTTCCGCAAGCTCCCGCCCTCAAAATCTTCCAAG
ACCACAGGCGAGCGCGAGGAGCGGAGGACGCTCGGCCTGCTCCTTCTCCGTGGCGAGGAG
GTCGTCTCCATGACCGTCGAGGGCCCGCCCCCGCCCGATGAGTCCCGGGCCAAGGCCTCC
GCTGGCGGTGGCGCCCTTTCCGGCACTGGCGTTGGTCGCGCTGCCGGCCGTGGGGTGGCC
ACCGGCCCGCTGCTCCAGGCGCAGCCCGGTCTCTCTGGCCCTGTTCGGGGTGTAGGCGGT
CCGGCTCCTGGCATGATGCAGCCGCAGATCTCGCGTCCCCCTATGCCGAACCTCTCAGCG
CCGCCGGTCGCATACCCACAGGTCGTCCGCCCGCCCCCGATGGGTATGCCGTCCATGCGA
CCGGGTGGCCCGCCACCAATGCAGATGCAGTTTCAGCGCCCACCGGGTCCCCCGCCTGCG
CCATACCCTGGGGGCCCGCCGCAGCAGTTCATGAGGGGACCGCCACCGATGGGGCCGCCA
CCAGGGAGGCCGGGGATGCCAGGCATGCCACCACCGCCAGGGATGAGGCCGATGCCACCA
CCGCAGTTTGGACAACCACCCAGGCATGGAATGCCGCCACCGCCGCCTGGTCCACAGCAG
CCTGGACAGAACCCCCAGTAGTAGAAAAACCTATCTGGTTTGGTGCTTCCATTGAAGATT
CACCTTGAGAAGAGATAAAAGCCTTGTCAGTGTAGCACTCTTGCTTTTGATGGGAGGAGA
CGGACTGTTGTCCAGTGCGATGTACGTAAAAGAGGCTAAAGCTTGTTTAACTGTTGGTTG
TTAAGCTAGGGACATGGATATACTATTTTGTTGTGTCGGGGCCTTGTTGCTGGATGTGCT
TGCACTTGTATTGAGATGTTATTTCGCTCTGTTAACTTCAGATCATAAATTGCTTTGCTT
GCAAAAAAAAAAAAAAAAATCTGTTTCATTTGTTCGTTCTTTGATATGAATTATGCTGTT
ACTCATGTGTTCTAAAAAAAAAAAAAAAAA

Homology of Contig U35_17474 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os07g07220.1	262	4e-57	protein\|LSM domain containing protein, expressed
Brachypodium v1_2	None
Arabidopsis v10	None