barSeed - Barley Seed Development Database

Probe CUST_39646_PI390587928

Source Contig U35_17475

barSeed

Links

Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_39646_PI390587928	Hv_44K_v2	GTAGCTCGCCATATAATGCAATGTAAAATCTACCTGTTCTGTTGCACATTTCTTATTCAA	1190	GeneList: yellow MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	5.468	6.099	1.420	0.656	0.273	0.226
Raw	171.312	329.416	61.210	47.028	5.362	4.538

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_67982.1	567	2e-24	169 - 228	100	60 / 60	plus	ABC07402
JLOC1	JLOC1_44941.2	2609	8e-25	2293 - 2352	100	60 / 60	plus
JLOC1	JLOC1_44941.1	2521	8e-25	2205 - 2264	100	60 / 60	plus
Harvest21	ABC07402	1292	3e-25	1192 - 1251	100	60 / 60	plus	ABC07402
Harvest35	U35_17475	1291	3e-25	1191 - 1250	100	60 / 60	plus

Contig Sequence (1291 bp)

>U35_17475 1291 Hv_44K_v2
CCTAACCATGGCCTCCATTCTCATCATCGCCGTCTCTTTTTATTTCCTATGTGTTGAGTC
CATGCATCCATCTCTAACACCAAAGGGTGTCACCAATGTTGATCCCATGTGGATCACTTA
AGTGCCTCTCTCTCCATATCCCACATGGTTATGTGACGATTGGAGATTAGCTTGAGCCCC
AGGATGGGCTCAAAGCTTTGATGCCCCAAGGAAGGGGATGTACTAACAGTCAAGCGCAAA
CCAGCCATTTAACCAGTCCAAGGAAGGACTACATCCAAGAGAGTTAATTTGAACCCTAGC
AAGAGATGGCTACGGGGAAAAGCGACCCTAACAATCAAGCATGGCCCCAGGGAGGGGTCA
TGCTGATACAAGCCAAATTGGACAAAACTGACATGTAGACAACCAATTGAGCTAGCATGC
CACTCCAAAATTTCATCAGTGGAATTCATACTGTATTTAGCTTAGGCCAAGTGCTTCTGG
CTGAAGCATGAGGCATTTAGCAGATGCTAATATTCTATTCATGGGTGTTATCTAGAGCAA
ATAAAATTTGACAGCTGACCAGTCTATAACTTCATTTCCACGCATACTCACACACACGCC
TCCCCACCACCACCAGCAACTTCACAACAACATCCTGTGATAACTTCTTGTGTAACCAAC
CACTCTAACTTTTTCTATGCACTGAGTAGATGCACCAACTAACAGTTCTTTATCCTTCAG
TTTATAGCTTGCATCTAGGTGGCTCAGGCTCTAAGGAGAGCCTGTGCCCCTCATCAGAGA
CAGGTTCAGGAGTGCTAATGTTAGTTTTTGGCACTTGGCACTACCTCCTGCCATTTGTAA
CACGGTGATGGGACTCCAAAGAAGGCTTTGGAGATACCAAAACACTGCTGTGCAACTCAA
TAACCCCAATGGACCCAGGCATATTTTTATTGTCTTGGGTCACCCACTCATCTAGATGTT
CATCTTCCCCAATGTCATTACCATGGTTAGGTCCAGGACCCACTGTCTCTCCTCTCTCTC
TCTGTGCAGAGAGGCTTTGATGCTTTTTAATGTAATATTATCGGTCACAGTGATTGTAAT
AATAAAGTAGTACTACGCCATTTCTAGGGCAGGAACTCTTTACTGTTTTATCAGTCGGAT
CTAGCTAAATATTCTGTCAATCTATAATCAGTACCTTCTCTATCGACATGGTAGCTCGCC
ATATAATGCAATGTAAAATCTACCTGTTCTGTTGCACATTTCTTATTCAATTATCTTTTA
TCCAATTTCGTTTCAAAAAAAAAAAAAAAAA

Homology of Contig U35_17475 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None