barSeed - Barley Seed Development Database

Probe CUST_39631_PI390587928

Source Contig U35_21443

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_39631_PI390587928	Hv_44K_v2	GTTACGGATTTGCCGTCGTGATTCTGTTAGTAAGAGTGATTTATGGTTCGTATGAAAAAA	587	GeneList: white MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.056	1.366	1.478	1.114	0.387	0.338
Raw	3112.607	6446.447	5986.423	7025.313	866.457	819.378

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_44423.3	2974	9e-22	6 - 60	100	55 / 55	minus	ABC23984
JLOC1	JLOC1_28800.2	3124	5e-22	3017 - 3071	100	55 / 55	plus
JLOC1	JLOC1_28800.1	3118	5e-22	3011 - 3065	100	55 / 55	plus
Harvest21	ABC23984	593	6e-22	1 - 54	100	54 / 54	minus	ABC23984
Harvest35	U35_21443	658	3e-25	588 - 647	100	60 / 60	plus

Contig Sequence (658 bp)

>U35_21443 658 Hv_44K_v2
CCAAGTTCGCGAGGGACGGGATCCTCTGCTGCCACGTGTTCAGGCTCTTCACGCAGTTCG
GCATCGACGAGATACCGGAGAAGTACATCATGGCCCGGTGGACCGACGGGTGCAGGGAGG
AGCAGCTGGACCGGTGCGAGGAGGGGCGGATGGTGGTGGCGGCGGTGCGGCGCGAGGAGG
ACGCGACGAGGTACGCGGCAATGATGAGCAAGGCGGCCGGGATCGGGAGGGAGATCTGCG
GGGACGGCGCCAAATGCGAGGCGTTCATGCTGGAGCTGGACCGGATCCGGGAGAAAATGG
CGACGATGACGATGGCAAATGATAACTTTTAGATGGTACGTGTTGGTTGAGCTTGGGCGA
CAGTGGACATGTTGAACAGCAGCAAGATGTGCTATTGTTCTGGCCCGGAAGGAGGAGGAA
GTGTAGCTCTTCATTCATTGTCCACAATGTAGAATGCAGCATTGGTAAGGTTTCTTTGCC
TGTGTAACTTAAAATGACTGTCAGTACTACTTGAGAGACGAATGTCGTGACCCGACAACT
AGGTCGGTACGGTAGTCTAAGGTGTATTCATGATTCATGCATTGACTGTTACGGATTTGC
CGTCGTGATTCTGTTAGTAAGAGTGATTTATGGTTCGTATGAAAAAAAAAAAAAAAAA

Homology of Contig U35_21443 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None