barSeed - Barley Seed Development Database

Probe CUST_39630_PI390587928

Source Contig U35_21444

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_39630_PI390587928	Hv_44K_v2	AGATTAAGAATGTGAATCCATCATCATTCCAAGACCAAACAACCCCTTTCGGCGACTGCG	698	GeneList: lightyellow MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	0.358	0.581	1.058	1.539	1.165	1.143
Raw	4.248	11.865	21.233	49.397	12.662	13.360

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK361172	1379	2e-24	705 - 764	100	60 / 60	plus	ABC18152 ABC45030
MLOC	AK357119	2023	2e-24	1373 - 1432	100	60 / 60	plus	ABC18152 ABC45030
MLOC	MLOC_64763.2	1216	2e-24	456 - 515	100	60 / 60	plus	ABC18152 ABC45030
MLOC	MLOC_64763.3	1882	2e-24	1122 - 1181	100	60 / 60	plus	ABC18152 ABC45030
JLOC1	JLOC1_42556.3	1627	8e-25	764 - 823	100	60 / 60	plus
JLOC1	JLOC1_42556.2	1985	8e-25	1122 - 1181	100	60 / 60	plus
JLOC1	JLOC1_42556.1	1319	8e-25	456 - 515	100	60 / 60	plus
Harvest21	ABC15534	964	3e-25	656 - 715	100	60 / 60	plus
Harvest35	U35_21444	1009	3e-25	699 - 758	100	60 / 60	plus

Contig Sequence (1009 bp)

>U35_21444 1009 Hv_44K_v2
CACACTACTCCGCACCTCCACCCCGACCCCGGAGGTGGCACCGTCCCCTCCCACCGACAT
GTGGGCCCTCAACCTGAAGGCCGGCGGGCCGTGCCTCACGCCGGTTCGCTCCGCCCCCGC
CGCTCGGGCCGGGAAGCCCTTCGCCGCTGCCGCCGGCAAGGCGGGCCCGTGGTCCGCGTG
GCGGAGGCGTGGCCCGGCGGTGAGGCCGCTCGTGGCGGTGCGCGCGTCGGGGCGGAGAGG
CAAGGGCGGGGCCGGCGGTGGCGGCGGCGACGACGAGGAGGCCGAGAGCAAGGCATCCCC
TTTCGGAAGTGGTGATGCATCTGTTCCAACAGGAGATAGCTCTGGCGGATTGAACAAACC
ACCTGATGAATCAAAATCCACCGAGCCAATTAATATTTCAAACAGCAATTACTGGAGAGA
CGTCAGAGCAAACCTTGTGCGTCGGGAACAGGAGCTATTGGTAGATCCAAGTGTTCCTGC
AGAGTCAAAGGCGTCCTCCGGAGAAGTACTACACCAGCTTCCTCAAAAGTGGGCTCACCC
TATAACAATGCCGGAGGCAGGGTGCGTCTTGGTAGCTACTGAGGTGCTCGATGACGACAG
CGTCTTTGAAAGAACTGTTATTCTCCTGCTCAGACTTGGGTCGAGAGGTACCTTTGATGG
CCCATTTGGGGTCATCCTAAACCGCCCACTTTACACGAAGATTAAGAATGTGAATCCATC
ATCATTCCAAGACCAAACAACCCCTTTCGGCGACTGCGCCCTCTTCTTCGGAGGCCCTGT
GGACATGAGCATGTTCTTAGTACGTACTAAAGACAGCTCACGCCTGAAGGGGTTTGAGGA
GGTGATTCCAGGTATCTGCTTCGGCTTTCGGACGGAGCTGGAGAAGGCCGGTGTTCTGAT
GAAGAGTGGTGCGATCAAGACCGAGGACCTGAGATTCTTCGTGGGGCATGCAGCCTGGGA
CTACGAGCAGCTGTTAAGCGAGATCAGGGCTGGATACTGGGCTGTTGCT

Homology of Contig U35_21444 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os05g34720.1	353	6e-140	protein\|transcriptional regulator, putative, expressed
Brachypodium v1_2	Bradi2g25060.1	350	9e-160
Arabidopsis v10	AT1G33780.1	325	7e-63	Protein of unknown function (DUF179) \| chr1:12244799-12246034 REVERSE LENGTH=325