barSeed - Barley Seed Development Database

Probe CUST_39629_PI390587928

Source Contig U35_21445

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_39629_PI390587928	Hv_44K_v2	GAAACTTTGCGAGCAAGGTCCAAATTACCTCTCGAAAATAAAATATGGACATTGTACAAT	1255	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK249296.1	1125	7e-23	1036 - 1095	98	59 / 60	plus	ABC15624
MLOC	AK354205	1312	7e-23	1223 - 1282	98	59 / 60	plus	ABC15624
Harvest21	ABC15624	1322	1e-23	1257 - 1316	98	59 / 60	plus	ABC15624
Harvest35	U35_21445	1358	3e-25	1256 - 1315	100	60 / 60	plus

Contig Sequence (1358 bp)

>U35_21445 1358 Hv_44K_v2
GACGAACTCTCCCTCGCGTCCCGATCTCAGCCGCCAGGAGGCGACCGACCCCGGCGACGC
TCGATCCGGTGATGCGTCGGTGCGCCAGTCGAGGCACCTCCGCCGCTGCCACAAGCGGCC
GCGCGGCCGGTCTTCTTCCCCGGCCGCCTGTCGCCCTGTCTCCTTCCCCTCCCCCTCTCC
TGCGCTCCTTTCTTCATCCAGTGCGGCTCGACGGGTGGGCTCCCGTCGGCGCAGAAGGTG
CCAAGAGAGAGGAAGGAGGTGCAGAGAGATCTGAAGCAGGGGAGTCCTCGGAATAAATCA
CACCAATACCCAAAGCGCGCAACAGAAACACACACCACAACGGAAGCCGACGCCGCGAAG
ACAGAGGTAGACGCAGATCCGTCTCGCCGATCGCTCGGATCAATTACGCTTCCCGTCCCG
TCGACGCGCCAGGAGCGGAGAGGGGACGACGGCGGGGGAGAGGAGCTGTCCGGATCCGCG
ACCTGAGTTGCCTTCCGTCTTCCAACGGGCATGCTAGCCCCACAATTCTGAAGCTGGACT
GGGGGAGCAGGGGACTGCTGCCGCTGGAGAGCTTGATGGTCAAGATGCTCCAGCAGAATT
TAGGATCGACCATGCTGAGGCTGAAGATGATTCTGCTCCACCTGCGGTGGAATCTGTGCT
TAATGCCAAGGATGGAGAAAGTGAAACAAGTGCTGCCACTGAGGTTGTTGATCCTGAAGA
ACAGCAGGATGGAGATAATGCTCCAGCAGAGTCCAGTGGTTCAGATGAGCCCCCCCCCAG
ACATGCTGAGTCTGTTTCCGTTGTCTTGAAGTTTGAGGGCAGCGTCGAGCAGAGCAAAGG
AGAAGAAGTTGTTGCTGAGATCATGAAGCCAGGTACAGATGGATCAGCTATTTCGGGGGT
GACTGGACAGCATGATGCTGACACAAGTGTGACTACTGCTGATCCCGTGATTAACGCTGA
CGAGGGCAACCATGACCATGCTGCAATCACAGAGCTGGTGGAGCAGGATGGGAGCAACGG
GCATGACCATGTTGACCAGATTGCTGATTCTTGCACATCTGCTCCTGAGATCGATGCTGA
TGGGAGCAAAGGGCTGCAAATAGAAGCACTGACTACTGAGCCTGAAGTATTGGATGGAAG
CGATTGTGAAGCGACTTCTAAAGGACCTTCAGAAGAGGAAGTTGTCGCAAACGGGCTTGC
TGTTCCTCCATAAAAACAATTGTTGATGAACTAAATGAAAAGGATTTCTCAATATGAAAC
TTTGCGAGCAAGGTCCAAATTACCTCTCGAAAATAAAATATGGACATTGTACAATTTATT
ATATTTATGAACAACTCTTACTGCCATTTGGTTTTTAC

Homology of Contig U35_21445 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None