barSeed - Barley Seed Development Database

Probe CUST_39623_PI390587928

Source Contig U35_19130

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_39623_PI390587928	Hv_44K_v2	TTGTCACTTCAGTTTCCAGTTCAGCAGCAATGCTTGAGATATGTGTGTCTGGTTTCCAAA	641	GeneList: turquoise MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.287	1.363	1.163	0.918	0.426	0.387
Raw	6425.830	10490.003	7921.100	9767.840	1589.440	1573.827

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_66004.1	807	6e-24	1 - 59	100	59 / 59	minus	ABC11558 ABC34352
MLOC	MLOC_66004.2	926	6e-24	1 - 59	100	59 / 59	minus	ABC11558 ABC34352
MLOC	MLOC_66004.3	874	6e-24	1 - 59	100	59 / 59	minus	ABC11558 ABC34352
JLOC1	JLOC1_43478.5	1239	3e-24	735 - 793	100	59 / 59	plus
JLOC1	JLOC1_43478.4	1306	3e-24	802 - 860	100	59 / 59	plus
JLOC1	JLOC1_43478.3	1072	3e-24	568 - 626	100	59 / 59	plus
JLOC1	JLOC1_43478.2	1119	3e-24	615 - 673	100	59 / 59	plus
JLOC1	JLOC1_43478.1	869	3e-24	365 - 423	100	59 / 59	plus
Harvest21	ABC11558	715	3e-25	642 - 701	100	60 / 60	plus	ABC11558
Harvest21	ABC11559	478	1e-23	422 - 478	100	57 / 57	plus
Harvest35	U35_19130	715	3e-25	642 - 701	100	60 / 60	plus

Contig Sequence (715 bp)

>U35_19130 715 Hv_44K_v2
CCGCCGCTTCCACCCGCTCCTCCGCCTGAACCCTAGCCATGGCGTGGCGCGGCGCTGCGT
CCCGCACCGTCCTTGCCGCGGTCCGCCGCCCGGCACCCTCCGCCGCGGTCGGCGGCCTCC
GCGCCCCTCCCCCCTTCGCCGCCCCGCGCCGCCGCATCCCTTCCCCCTTCGCCCCCTCCC
ATTCCACCTCCCCGCTCGGGGCCGCCCGGCCCCTGGCGGCCATGATGGGGTCGCCGCTGA
CGGCGGCGGTGGTGCTAGGGCGGATGACGGCGCACCCGTCGGCCAGCGCCCGGGCCTGCT
GCGAGCTCTCCCAGGGTACTTGAATTTGCCATGTTGATTCACCATCCTTTTTAAAGAGGA
TACAAATCTTGGATTCGTCTTTTGGAAAGCTATTCTGGTGCCTCCCTTTTAACCATTCGA
GTTAGAAGAATGTCTCCAACAAAATAGCTTCTCTCCAAATTACTAGCCTAGACTGAAAAT
AATCTTCCTGTCATATGACATGGTTTATGTCATGGATTTAGCTTCCTACTTTTGTAGCGA
GATAACTTTGTGTTGCCTGCTAAGAGGATTTGGTGGCACATTTTAAATGATTTCTTAGAT
TTAAATGTCTCTCCGTTCCACGAGCAACAACTGTGGTTACATTGTCACTTCAGTTTCCAG
TTCAGCAGCAATGCTTGAGATATGTGTGTCTGGTTTCCAAAAAAAAAAAAAAAAA

Homology of Contig U35_19130 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None