barSeed - Barley Seed Development Database

Probe CUST_3961_PI390587928

Source Contig U35_25388

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_3961_PI390587928	Hv_44K_v2	AATTGCTAGGTGTAATTGGTGATATCCTTCAGCAGATTGTACGGAGTGGGGCTAGCAATG	838	GeneList: lightcyan MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.014	1.183	1.783	1.735	0.725	0.640
Raw	234.561	435.848	563.442	889.244	128.325	123.773

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_59703.1	3292	2e-24	2429 - 2488	100	60 / 60	plus	None
JLOC1	JLOC1_38867.1	3221	8e-25	2423 - 2482	100	60 / 60	plus
Harvest21	ABC24466	899	3e-25	839 - 898	100	60 / 60	plus
Harvest35	U35_25388	900	3e-25	839 - 898	100	60 / 60	plus

Contig Sequence (900 bp)

>U35_25388 900 Hv_44K_v2
CTCTTTCCTTAATGCAGGGATAGGCGGCATATGAACTCCAAAAACCAGTTTGGTGAACTT
TTGATAAGTTGTGGTTTACTTGGTGAAGCACTTAATGTTTTCAAAGAACTCGAATTGTGG
GATAATCTAATCTATTGCTATCGATTATCGGGTAAAGTTGCTGATGCGGTCAGTTTAATA
AATACCCGGCTCTCTGTTACACCAAATGACCCAAGGTTATGGTGTTCACTTGGTGATGCT
ACAAATAATGATGATCATTATAAGAAAGCACTGGAAGTCTCAGATAACAAGTCTGCTCGA
GCTCTGCGCTCTCTGGCTCGCAGTGCATACAACAGGAATGACTTCCATACATCCAAAATT
CTTTGGGGATCAGCATTGGCACTGAATTCTTTGTATCCAGATGGCTGGTTTGCCTATGGT
ACAGCTGCATGGAAGGATAAAGATCTTGAGAAGGCAGTGGATGCTTTTAGTCGTGCTGTG
CAGATAGATCCTGAAAACGGAGAAGCATGGAACAACATAGCCTGTCTGCACATGATTAGA
GGAAAGAGCCAGGCAGCAGTCCAGGCATTCAAGGAAGCTGTAAAGTTCAAGAGGAATAGC
TGGGAAGTTTGGGAAAATTACAGTAAGGTTGCTTTGGACACATGCAACATGCGACTGACA
CTTGAAGCTGTCAAAATGGTATTGAATCTGTCCTCGAACAAGCGCTTCAATGTTGATCTA
TTGGACAAGGTGATGGTCTCTGTCGAAGAACAAGCTAGACATCTTAGTGATACTCAAGAA
GCTAAATCCATAAGCAACGCTTCAGATGATGCAAATAAAGAGACCAGGCTACCAAATCAA
TTGCTAGGTGTAATTGGTGATATCCTTCAGCAGATTGTACGGAGTGGGGCTAGCAATGCA

Homology of Contig U35_25388 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os07g27180.1	919	5e-158	protein\|tetratricopeptide repeat domain containing protein, expressed
Brachypodium v1_2	Bradi1g28660.1	890	1e-158
Arabidopsis v10	AT5G17270.1	899	4e-99	Protein prenylyltransferase superfamily protein \| chr5:5679995-5685597 FORWARD LENGTH=899