barSeed - Barley Seed Development Database

Probe CUST_39615_PI390587928

Source Contig U35_19137

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_39615_PI390587928	Hv_44K_v2	ACCGTCGAGTTTAATCCTACGTTTGTCATGAAACAGAGAATTTCTAGACGAAGCAAAAAA	1236	GeneList: green MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.325	1.589	1.516	0.900	0.227	0.256
Raw	496.011	940.684	779.972	737.645	61.896	78.285

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_54692.2	2493	3e-22	3 - 58	100	56 / 56	minus	ABC11829
MLOC	MLOC_54692.1	1468	3e-22	5 - 60	100	56 / 56	minus	ABC11829
JLOC1	JLOC1_35214.5	1517	1e-22	1454 - 1509	100	56 / 56	plus
JLOC1	JLOC1_35214.4	2411	1e-22	2348 - 2403	100	56 / 56	plus
JLOC1	JLOC1_35214.3	1473	1e-22	1410 - 1465	100	56 / 56	plus
JLOC1	JLOC1_35214.2	1443	1e-22	1380 - 1435	100	56 / 56	plus
JLOC1	JLOC1_35214.1	1441	1e-22	1378 - 1433	100	56 / 56	plus
Harvest35	U35_19137	1307	3e-25	1237 - 1296	100	60 / 60	plus

Contig Sequence (1307 bp)

>U35_19137 1307 Hv_44K_v2
GCACGAGGGGCACACAGAGGTACTACGTGCTTGGAGGCAAAGGTGGTGTTGGGACAACAA
GCATGGCGGCATCGCTTGCTATGAAGTTTGCCAACCGTGGTGAACCGACGCTCATAGTTT
CTATGCACCCAGCACACTCACTGGGTGATACATTTGAACAAGACCTGAGTGGCGGTAATA
TCGTACCTGTCAATGGAGTTGACTCTCTTTTTGCTGCCGAGATTGGCCATGTTAATACAA
AAGAGGAATCTTCTAATGGTGGATCTTTTATCCGTAATATACTGGACAAGATAGGGCTTG
GAGTTCTTGCTGATCCGCTGGGAAAGAATAAGCTGCATGAAATGCTGATGAAAACTCCTG
GACTTGGAGAAGCCGTTGCAATTTCTAAGCTGGTACAAATTGTTGAACTGCAAGAGAGCA
ATAAATTTAGGCGCATAGTTTTGGATACCCCGGCCACTGGGCATACACTTAACCTTTTAT
CTGCTACAACTTTAATGGAAAAGCTCCTTGGTATGGCCGCATGACTCTTGAATAAGTGCT
GTGAATATGGCGTCATCCTTCCCAGCTCTTAAATCAGCTTTCGGGAAAGACCAAATAGAT
CCTGCCAAGATAGAGGTGCTCAGGAAGCAGATTGCCAGAGTACATGAGCTTATGCAAGAT
CCACAATCAACTGAATTTATCATTGTGACGATTCCTACGGTGATGGCGATTACTGAGTCA
TCAAGGTTTCATGCATCTTTAAAGAAGGATGGTGCGCCAGCAACAAGGCTTATCGTAAAT
CAAGTGTTGCCGCCCTCTACATCTGATTGCAGATTCTGTTCTACAAAACGCAAGGAAGAA
GCACGCGCCCTGAATATGATAAGCAATGATCGTGAGCTTAGCGGCCTAGAGCTAATCCAA
GCACCACTTGTTGATGTGGAGGTTAGAGGCGCCCCTGCCCTCAGATTCTTCAGTGACGTG
GTCTGGAAATAGCCGCTAGGATGCCAGGCCGCGATGAGAATTTTGTTAGTACTTATCTTT
TGTGACAGAGGGAGTATTTCATTATAACTCGAGAGTACTGGTGGCGGCACTCGTTGTCCA
GAAATGCGGTGAAATCTGGACAAAAGATGATGCCCAGCAGGATATGAGGCTGTTCAGGCT
GTAGATCTGCTTCAGCGTTTCATGTTTGGTATTATTGCCCTCGCGTGTTTATCTCTGAAT
TGAACAATCCATGATGGTGTTGTTTCTGTCTGTGCAACCGTCGAGTTTAATCCTACGTTT
GTCATGAAACAGAGAATTTCTAGACGAAGCAAAAAAAAAAAAAAAAA

Homology of Contig U35_19137 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os02g51100.1	394	4e-91	protein\|arsenical pump-driving ATPase, putative, expressed
Brachypodium v1_2	Bradi5g12380.1	372	1e-138
Arabidopsis v10	AT3G10350.2	433	4e-82	P-loop containing nucleoside triphosphate hydrolases superfamily protein \| chr3:3208310-3210678 FORWARD LENGTH=433