barSeed - Barley Seed Development Database

Probe CUST_39613_PI390587928

Source Contig U35_19138

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_39613_PI390587928	Hv_44K_v2	GTGAAAGTAATTATGCTTACGCATTTTGGTGCATCTGATTTCGGTTGTGCCTAATAAAAA	711	GeneList: yellow MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	2.655	3.042	1.170	0.780	0.374	0.475
Raw	55.208	101.794	34.019	36.585	5.056	8.314

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_61217.1	1269	2e-23	997 - 1054	100	58 / 58	plus	ABC10667
MLOC	MLOC_61217.2	704	2e-23	513 - 570	100	58 / 58	plus	ABC10667
JLOC1	JLOC1_40002.1	1398	1e-23	997 - 1054	100	58 / 58	plus
Harvest21	ABC10667	782	3e-25	712 - 771	100	60 / 60	plus	ABC10667
Harvest35	U35_19138	782	3e-25	712 - 771	100	60 / 60	plus

Contig Sequence (782 bp)

>U35_19138 782 Hv_44K_v2
GCTACACACATCGCCACGGTCTTCTTGGTTCCTCCGTCCACAGCCAGCCAGCTCCGCTCC
ACCACCTGAAGCCAAATGGCGAAGCTGCTACCAGCCGCAGTCGCGTTCCTCCTGGCCCTC
GCCGCCGCGGCGGCGCTGGCCCCGTCCTCGGCCTCAGCGTTCACGACGACCGTGAACGGC
GCCGGAGAGCTTGGCCTTGGCGGCGCAGCGGCCGTGGTGATGCGCCGGGGCGGGCGGACG
TGCAGGGGCACGGTGGGCGAGTGCATGGAGTACTTCGGCGTGGACGGCGAGGGCGAGGGC
GAGGTGGCGGCCATGGCCGGCAAGCGGCGGGTGCTGCAGGGCGGGAGCGGGTACATCGGC
TACGACGCGCTACGGCGGGACAACGTGCCGTGCTCGGAGCGCGGGGCCTCGTACTACAAC
TGCCAGCCCGGCGCCGAGGCCAACCCCTACTCCCGCGGATGCAGCGCCATCACCCAGTGC
AGGGGCTGATTCATTAAACCCTTCTTCATGTCCTCTTACCTGCATGCCTCATCAACTAGC
AGTACTAGTAGTACTATCTATCTGTAATGTAGCGTAACGTAATTACAAGAAGAAGATCAA
AACACTAGTTGATGATGCTTGATCAATCATCACTGGCTGGTGTGATCAATCGTACTGTAC
GTATCACTGGGGGAGGCATGGTTAATTATTGTGTCATTTGTGTCTATTTGGGTGAAAGTA
ATTATGCTTACGCATTTTGGTGCATCTGATTTCGGTTGTGCCTAATAAAAAAAAAAAAAA
AA

Homology of Contig U35_19138 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None