barSeed - Barley Seed Development Database

Probe CUST_39605_PI390587928

Source Contig U35_21453

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_39605_PI390587928	Hv_44K_v2	AGGCCCGTCTCAGCACGAGCAACATCCTTGAATCATGATGCTAGTTTTACTGACAAAAAA	1268	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_15024.1	3437	9e-22	3322 - 3376	100	55 / 55	plus	ABC04975 ABC15147
JLOC1	JLOC1_10285.1	3426	5e-22	3178 - 3232	100	55 / 55	plus
Harvest21	ABC15147	903	3e-25	12 - 71	100	60 / 60	minus	ABC15147
Harvest35	U35_21453	1339	3e-25	1269 - 1328	100	60 / 60	plus

Contig Sequence (1339 bp)

>U35_21453 1339 Hv_44K_v2
GGATGAATCAAAATGAGGAGCTGTTTACTGTTAGCAACAGTTCACTTTCTGAATTCGCTG
TTCTTGGGTTTGAATTGGGCTACTCCATGGAGAACCCAAATTCGCTAGTACTCTGGGAAG
CTCAGTTTGGTGACTTCTCCAATGGTGCACAAGTGATGTTCGACCAGTTTCTGAGTAGTG
GAGAGGCAAAATGGCTGCGCCAAACTGGCCTTGTTGTTCTACTGCCTCATGGTTATGATG
GCCAAGGTCCTGAACACTCCAGCTCCCGTTTGGAGCGCTTCCTTCAGATGAGTGATGACA
ATCCTTTTGTCATACCTGAGATGGACCCAACACTTCGCAAGCAGATACAGGAGTGTAACT
GGCAGGTTGTGAATGTGACAACCCCTGCAAACTATTTCCATGTGCTGCGCCGTCAGATAC
ATAGGGATTTCCGGAAGCCGCTGATTGTGACGGCCCCCAAGAATCTACTTCGGCATAAGG
AGTGCAAATCCAACCTCTCTGAGTTTGATGATGTTGAAGGGCACCCAGGATTTGATAAGC
AAGGAACACGTTTCAAGCGCCTGATAAAGGACCGTAACGATCACAAGGAAGTCGAGGAGG
GTATCAACCGCCTTGTATTATGTTCTGGAAAAGTATGTGTTCCCTTATAGCACAAATCAA
GCTAAACAAATTACCAGTTGAGTGCAAATATGAACTCCCTTTTGAAATGGTTATATTGCA
GGTGTATTATGAACTTGATGATGAGCGGAAAAAGTCCGAGCGCAGCGATGTTGCTATTTG
CAGGGTTGAGCAACTTTGCCCATTCCCATACGACCTTATCCAGAGAGAGCTAAAGAGATA
TCCAAATGCGGAGATTGTGTGGTGCCAAGAGGAGCCTATGAACATGGGCGCATACAGCTA
CATCTCACCCCGCCTGTACTCAGCCATGAAGACCCTCGGGCGGGGCACTTTTGAGGACAT
CAAGTACGTGGGCAGGGCGCCTTCGGCCGCCACAGCCACCGGCTTCTTGACGGTCCATGT
GCAGGAGCAGTCGGAGCTGGTGAAGAAGGCATTGCAACCGGAGCCGATCAAGTTCCCCTG
ATGCGGGAAACCCGTGCAAAAATAACCCGTCGCAGGCTCGGGTTGTCCAGCCTGTGCACA
CACCGTCTTAAAAGTTTTGGCCTGTACAAGTTCTTTTTTGCTCTCTCTTCGTTCTTCTGT
GAGGCGTTTCGCTCTGAAGGTCGTGAATAATCAACTATTGTGAACCTTCTTGCTGTTGAG
GAGGCGTGAGGCCCGTCTCAGCACGAGCAACATCCTTGAATCATGATGCTAGTTTTACTG
ACAAAAAAAAAAAAAAAAA

Homology of Contig U35_21453 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os07g49520.1	1009	0.0	protein\|2-oxoglutarate dehydrogenase E1 component, mitochondrial precursor, putative, expressed
Brachypodium v1_2	Bradi5g08235.1	1017	3e-173
Arabidopsis v10	AT5G65750.1	1025	2e-165	2-oxoglutarate dehydrogenase, E1 component \| chr5:26304212-26307947 FORWARD LENGTH=1025