barSeed - Barley Seed Development Database

Probe CUST_39604_PI390587928

Source Contig U35_21454

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_39604_PI390587928	Hv_44K_v2	AGCACCATCGTGCTTTTCACATGGCTGGTCAGGGGCCACCTTCACCCAATGACACAGTTC	18	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK369917	1634	2e-24	34 - 93	100	60 / 60	plus	ABC48434
MLOC	MLOC_40342.1	729	2e-24	580 - 639	100	60 / 60	minus	None
JLOC1	JLOC1_26367.1	649	8e-25	581 - 640	100	60 / 60	minus
Harvest35	U35_21454	601	3e-25	19 - 78	100	60 / 60	plus

Contig Sequence (601 bp)

>U35_21454 601 Hv_44K_v2
ACACAAGCAAATATGCAGAGCACCATCGTGCTTTTCACATGGCTGGTCAGGGGCCACCTT
CACCCAATGACACAGTTCGCCCACCACCTCGCTAGACATGGCGTTCCTGTCACCGTCGCC
GTCGCCGACGTCCCGTCTACAGGCAAGTCCTCTGAGACCATCGCCGGCCTCGCCGCATCC
TATCCTTCTGTCTCGTTCCACCTAATCCCGCCGGCAGCGACCCGTTCCGCCGAGACGGCA
GACCCCGACGCCGATCCTTTCATCGCCCTTATCGCCGACCTCCGCGCCGCCAACCCCGCC
CTCCTCGCCTTCCTGAGGTCCCTCCCGTCCGTCAAGGCTCTAGTCACCGACTTGTTCTGT
GCCTACGGGTTGGACGCCGCCGCAGAGCTCGGCGTCCCGGCCTACCTTTTCTTCACCTCG
GCTGCGTCGGTCCTTGCTGCCTACCTGCACATCCCCGTCATGCGCTCCGCTGTCTCCTTC
CGGGACATGGGGCGCTCCCTGCTGCACTTCCCCGGAGTCCACCCAGTTCCGGCGTCCGAC
TTGCCGGAAGTGCTGCTGGATCGCGGGGACAGCCAGTACAAGGCAATCCTTAGCCTCATG
G

Homology of Contig U35_21454 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os01g53420.1	512	7e-94	protein\|anthocyanidin 5,3-O-glucosyltransferase, putative, expressed
Brachypodium v1_2	Bradi2g49110.1	472	2e-107
Arabidopsis v10	None