barSeed - Barley Seed Development Database

Probe CUST_39594_PI390587928

Source Contig U35_19141

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_39594_PI390587928	Hv_44K_v2	ATTGGCTGAACACTTTTAGTGGCAGCAAGATTTGTCTGGAATCCTATGATGGTGAAAAAA	1105	GeneList: yellow MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	2.071	1.790	0.993	0.935	0.417	0.393
Raw	218.558	287.326	144.303	212.652	33.571	33.540

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction
JLOC1	JLOC1_39045.5	1493	8e-25	1229 - 1288	100	60 / 60	plus
JLOC1	JLOC1_39045.4	3169	8e-25	2905 - 2964	100	60 / 60	plus
JLOC1	JLOC1_39045.3	1190	8e-25	926 - 985	100	60 / 60	plus
JLOC1	JLOC1_39045.2	1914	8e-25	1650 - 1709	100	60 / 60	plus
JLOC1	JLOC1_39045.1	1200	8e-25	936 - 995	100	60 / 60	plus
Harvest35	U35_19141	1196	3e-25	1106 - 1165	100	60 / 60	plus

Contig Sequence (1196 bp)

>U35_19141 1196 Hv_44K_v2
CACGCGTCCGAAAATCTCTTCCAGAATCGGAGGTGGAAAAGTATCTGCGAGTTTCGCCTT
CGCGCGGGCGGCCCGCGGCGGGGGGGAGATGGGCTGCTGCAGCAGCCGGAGCTCGGACTC
GCCGGCCAGCCGCGTCACGCGCTGGCGCTCCACCGGGATCGTCGCCCTCCGGGACGCCAG
ATTGAAGGCAGTACCTAATGAAGTTTTACAAGTGGGAAATACCCTTAGAACTCTGGATTT
GACAAACAACAAGATAGTTGAGATTCCCCAGGAAGTTGGTACCATAGTGCATATGCAAAG
ACTGGTTTTGGCTGGTAATTTGATTGAAAACATTCCAGCCAATATTGGATACCTGAGGAA
CCTTAAAATCCTGACGCTTGACAGAAATAGGATCACTGTCTTGCCTGAAGAATTGTGTTC
TCTATCAAATCTTCAGCAGCTTACACTTTCTCAGAATTCTTTACTGTGCCTACCTAAAAG
TGTTGGAGATTTGTCCAATATGCTGCTACTTAATGTATCTGATAACAAACTAAATGCCCT
TCCTGAATCAATTGGAGGCTGCAAGTCCCTGGAAGAATTGCAGGCAAATGGAAATGCAAT
CGAAGACGTGCCCTCGTCAATTTGCAACCTTGCTTGCCTCAAATCTTTATCATTGAACGG
AAACAAAATTCGTCAGCTTCCCCAAAACTTATTGAAGGATTGCAAGGCTCTTCAGAACTT
GTCACTGCACAACAACCCAATCTCTATGGACCAGTTCCAGCAAATGGATGGATTCGCTGA
ATTTGAAGCACGCAGAAGGAAGAAATTCGACAAGCAAATCGATTCAAATGTGATGATGAG
CTCCACAGCCCTGGATGAAGGCATTGATTTACGTTAGTTTTGCAGGGGGGAAACTTGGGT
TAACTCATTTTTTTTTCCTCATTAGTCGGAATTAATTGTAAAGTTGTATATATATCAGTC
TCTTGACAATCTGATTTGGTAAAGAAATCAATAAATACAGTACAAAACATACGAAAAATG
AGTGGACCACCTCTGTCATGTGGATCTACAGTCGTTGACTATCAACATACTATGTACTCT
CCTGTCTAAGCCTACAACATCTTCCATTGGCTGAACACTTTTAGTGGCAGCAAGATTTGT
CTGGAATCCTATGATGGTGAAAAAAACATTTTAGTCTTCAAAAAAAAAAAAAAAAG

Homology of Contig U35_19141 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os03g11360.2	263	6e-144	protein\|leucine rich repeat containing protein, expressed
Brachypodium v1_2	Bradi1g70250.1	195	8e-104
Arabidopsis v10	AT5G07910.1	262	2e-97	Leucine-rich repeat (LRR) family protein \| chr5:2521937-2523769 REVERSE LENGTH=262