- Probe CUST_39581_PI390587928
- Source Contig U35_45415
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_39581_PI390587928 | Hv_44K_v2 | GGTTCTTGTTGACTGCACACTTTGCAGTGAGGAAATACTTTGGTGGTTACTTTATGCAAA | 14 | GeneList: darkslateblue MasterList: None |
Probe Values
| 3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
|---|---|---|---|---|---|---|
| Normalized | 1.381 | 1.632 | 1.030 | 0.879 | 0.455 | 0.679 |
| Raw | 419.307 | 761.610 | 429.573 | 575.667 | 103.741 | 170.091 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| JLOC1 | JLOC1_3939.1 | 1627 | 1e-22 | 1523 - 1581 | 98 | 58 / 59 | plus | |
| Harvest21 | ABC44270 | 512 | 3e-25 | 15 - 74 | 100 | 60 / 60 | minus | ABC44270 |
| Harvest35 | U35_45415 | 512 | 3e-25 | 15 - 74 | 100 | 60 / 60 | minus |
Contig Sequence (512 bp)
>U35_45415 512 Hv_44K_v2 TTTTTTTTTTTTTTTTTGCATAAAGTAACCACCAAAGTATTTCCTCACTGCAAAGTGTGC AGTCAACAAGAACCATTTAACACTCGATTCATGTGATGTAAAACATGAACACTTTTTGTT ACTTCTGCCTGATTTCATCATCAGGAACTAATAAATTCCGCCATAACTTATGAAGGAAAA AAAATCCATGGCGTACATAAATATTGGTTAGGATCCTCATGGGGAAGTGTCAGATTGCTA ATACTCTGCCAAAAACACGAATCTGGGTGATTGGTGTCTCAATTGCCCCTGGGCGTGCCA GATTCCAGATATGAAGAACTTCGATCCCAATCCAAAGAATTTGCGCCAGCTCCCAATTAT AAGAATTTTGCAGCAGCACAACATTCTGTCTGGACCAAAAGCGTGATCAGACTAAGCAGC AACACCCGCTGGATAGTTGAGCATCGTGCCTTTGACTCGTTGATGGCCCGGTAAAATCCT TTTGAAAAATACTCTGCCCTTCTTTCCCATTC
Homology of Contig U35_45415 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | None | |||
| Brachypodium v1_2 | None | |||
| Arabidopsis v10 | None |