barSeed - Barley Seed Development Database

Probe CUST_39575_PI390587928

Source Contig U35_21463

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_39575_PI390587928	Hv_44K_v2	TGTCGGACGCCAAATTTTGCAGATGAACCAGAAAGCTAAAGAAGAATGGGACAAAAAACA	855	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK363025	2901	2e-24	2056 - 2115	100	60 / 60	plus	ABC14601
MLOC	MLOC_71117.3	750	2e-24	520 - 579	100	60 / 60	plus	ABC14601
MLOC	MLOC_71117.1	1410	2e-24	1181 - 1240	100	60 / 60	plus	ABC14601
MLOC	MLOC_71117.2	1206	2e-24	973 - 1032	100	60 / 60	plus	ABC14601
JLOC1	JLOC1_47233.3	631	8e-25	398 - 457	100	60 / 60	plus
JLOC1	JLOC1_47233.2	719	8e-25	486 - 545	100	60 / 60	plus
JLOC1	JLOC1_47233.1	833	8e-25	600 - 659	100	60 / 60	plus
Harvest21	ABC18452	1075	4e-24	1000 - 1059	98	59 / 60	plus
Harvest35	U35_21463	986	3e-25	856 - 915	100	60 / 60	plus

Contig Sequence (986 bp)

>U35_21463 986 Hv_44K_v2
GCAGACAAGTAACAAACAGCTGCAACCCACAGAAATCCAGCAAGCCTCACAGCAATTATA
TGGAACTACTAACACCCCTCAGTCGTACCCTCGGCCAACCAGTGGTTCGATGCCTCTTAG
ACCACAGAGTCAAGCGCCTGAAACACGACCTCCCTTTCATCCTCATGGAAGGATTCCTGC
AAAAGTCGGAACTGTTCCTACTCATCCGTCAATGCAACAGAATCCATTGGCACGCCAAAT
GCAACAAAATAAGGATATAAAAAATAATGCTCATAACCCAAGTGCTAATACAAAACAAGG
TTCTGAGCCCGCAGGCAAGGCCCGCCAGGTTGGCACAGGTCCTTCGGCGAAATTGCAAGG
AAAGCAGGCGGCCCCTAAAACATCTACACCACCTGCCGCAAGGACTACTAAGAAATCGGG
TGGCCAGAAGAAATCATTGGAAACGGCTGGTTCAGCACCACCACCATCCAGCAAAAGACA
AAAGACAGCTGGAGCCTTCCAGGAACAAAGCATCGATCAACTTAATGATGTCACAGCTGT
TAGTGGTGTTAATCTTAGGGAAGAAGAGGAACAACTGCTCTCTGCCCCCAAGGAAGAGAG
CCCAGCCACAGAGGCCGCACGGAGAATCGTACAGGAGGAAGAAGAAAACCTCTTTCTGCA
GAAGGGCCCTCTTGTGAAGAAACTAGCAGAAATCGTTCTTAAATGTAACTTGAAGAACGC
TGGCGCTGATGTTGGGCGTTGTTTATCAATGTGTGTGGAGGAGCGACTGCGAAGATTCAT
AAGTACTCTTATAAGAGTTTCAAAGCAGAGAGTCGACGCAGAAAAGACTGGTCATCGACT
AGTTATTACTTCAGATGTCGGACGCCAAATTTTGCAGATGAACCAGAAAGCTAAAGAAGA
ATGGGACAAAAAACAAGCAGAAACAGACAAGAANCAGAAACAGACTGAGGATGGTAGCAG
TGGTGGCGCAGAATTGGAGAAAGAAA

Homology of Contig U35_21463 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os02g43750.1	729	3e-145	protein\|transcription initiation factor, putative, expressed
Brachypodium v1_2	Bradi3g50457.1	795	1e-172
Arabidopsis v10	AT5G43130.2	852	1e-71	\| Symbols: TAF4 \| TBP-associated factor 4 \| chr5:17315608-17321144 REVERSE LENGTH=852