barSeed - Barley Seed Development Database

Probe CUST_39572_PI390587928

Source Contig U35_21466

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_39572_PI390587928	Hv_44K_v2	CTCGGGTCTGGACCCACATTTTATTGAGAAAACTGTAAAGGACAGATCTAGTGCATAGAA	322	GeneList: turquoise MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.314	1.416	1.081	0.957	0.392	0.526
Raw	243.928	416.503	276.271	394.689	55.020	81.365

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK373109	3028	2e-24	2777 - 2836	100	60 / 60	plus	None
MLOC	MLOC_18922.3	3873	2e-24	2395 - 2454	100	60 / 60	minus	None
MLOC	MLOC_18922.6	4200	2e-24	2337 - 2396	100	60 / 60	minus	None
JLOC1	JLOC1_13112.2	3637	8e-25	1137 - 1196	100	60 / 60	plus
JLOC1	JLOC1_13111.1	3136	8e-25	2364 - 2423	100	60 / 60	minus
Harvest35	U35_21466	608	3e-25	323 - 382	100	60 / 60	plus

Contig Sequence (608 bp)

>U35_21466 608 Hv_44K_v2
GAGCAATGGAGTGATGAGAGTATGCTGGGTCAGGAGATCTGTGTTCTTGTCAGGAACGCT
AGATCAGCAGCGTATCGACGGGCACTTGCCACAGTTGTTCTGGAGCAGCAGGAGGAAGAT
CTAGAGTTTCTGTAGTCTGCAACATCCCAATCTTCCATTGTGAAGAACTTGCTGCAAGCA
CGGCTATAGAACATGGTAATTTTGCTAGATGCATGAAAGTAATTTTTGCAACATGTCTGA
GTTGTTAGACCAGTAATCTGATTTGCGTCTAGTGGTAAGTGGCAACACATTGTTTGCCCC
CTACGTGTGTTATGGTTCACAGCTCGGGTCTGGACCCACATTTTATTGAGAAAACTGTAA
AGGACAGATCTAGTGCATAGAAGCTCCCATACAAGGTGGGGTCTGGAGAGGGATTATAGG
AACTTAGTCTTATGTCTGCTACAGTGCAATGCAGAGAGGTTGGTTCGAACCAGGACCGTT
GGCACAAGTGGGGTGTACTTCACCACTGCGCCAAGCCTGCCCTCTTTATTGAGAAAACTG
TGTGTCTCAAGAAATGAAAAAGAAAATTGCATGCATGCTACTTATTTTTGGAAAAAAAAA
AAAAAAAA

Homology of Contig U35_21466 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None