barSeed - Barley Seed Development Database

Probe CUST_39560_PI390587928

Source Contig U35_19157

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_39560_PI390587928	Hv_44K_v2	GGAAATTCTGTGATGCAAGGGGCCCCTTTTAACGTGGTAGCTGTATCCGTTTGCAAAAAA	1377	GeneList: blue MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.508	1.230	1.033	0.750	0.302	0.301
Raw	15562.500	18644.220	14555.533	14963.643	2411.987	2569.217

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
JLOC1	JLOC1_8939.1	1600	6e-21	1384 - 1440	98	56 / 57	plus
Harvest21	ABC10648	1448	3e-25	1378 - 1437	100	60 / 60	plus	ABC10648
Harvest35	U35_19157	1448	3e-25	1378 - 1437	100	60 / 60	plus

Contig Sequence (1448 bp)

>U35_19157 1448 Hv_44K_v2
GCAAGTTCGGGGTGGATGAATCGTACAGGCTGACCGTGCCTTCAACCGGGAGTCCCCTAT
ATGCCCGGATTGAGGCCCAAACAGTTTACGGAGCGCTTCATGCTTTAGAGACATTCAGTC
AATTGTGTTACTTCGATTTTATTTTGAGTGTAACTGGACTACATTGGGCTCCCTGGACTA
TCGTGGACAAGCCCAGATTTCCTTATCGAGGGCTTCTTATTGATACCGCAAGGCATTATC
TTCCTGTTCCGGTAATCAAAAGTGTAATCGATTCAATGGCCTACAGTAAATTGAATGTTC
TTCATTGGCACATCGTGGACGAGCAGTCATTTCCTCTTGAAATACCTTCATACCCAAAAT
TATCGAATGGTGCATACTCTTATTCAGAAAAATATACAATCAATGATGCGATCGACATTG
TACAATATGCTGAAAGAAGAGGTGTGAATGTCTTGGCTGAGATTGATGTCCCTGGCCATG
CTGGCTCATGGGGTGTTGGATATCCGTCATTGTGGCCATCAGCTACCTGCCAACAACCGC
TTGATGTCAGCAGCGAATTCACATTTAAAGTGATCGACGGAATTCTTTCAGATTTTAGCA
AGGTTTTTAAGTTCAAGTTTGTCCATTTGGGAGGTGACGAGGTCGATACAAGTTGCTGGA
CTACCACACCACGCATTAAATCATGGTTGGTTCAACATGGTATGAACGAGTCTGATGCCT
ACAGATATTTTGTCCTGAGGGCTCAAAAGATTGCAATTTCACATGGCTACGAGGTTATTA
ACTGGGAAGAAACATTTAACAACTTTGGAGACAAGTTGGACCGCAAAACTGTGGTGCATA
ACTGGCTTGGAGGTGGAGTTGCAGAGAAAGTGGTTTCTGCTGGTCTGAGATGCATTGTCA
GCAACCAGGATAAGTGGTACCTAGATCACCTGGATGCTACATGGGAAGGATTCTATATGA
ATGAACCATTGACAAATATCTACAACCCAGAACAACAGAAGTTGATTCTTGGCGGAGAAG
TATGCATGTGGGGCGAACACATAGATGCATCCGACATTCAACAAACCATTTGGCCTCGTG
CTGCAGCAGCTGCAGAGCGGCTGTGGACTCCGGTTGAGAGGCTGGCGAAGAACCCCACGG
CGGTCACTGCAAGATTGGCACACTTCAGGTGCTTGCTGAATGAGAGAGGGGTCGCCGCGG
CACCGCTGGCTGGATATGGCCGCACAGCTCCATCAGAACCAGGATCCTGTATGAGGCAGT
AGGATAATCATAACGGGGGTAGATACCATTCATACAGATACAGGAATAAACATCAGCCGA
GGCATCCTTTTTTTTCACCGGTCTGGGCAATGAATCCCAGATAAATGTACTGATTCAGGA
AATTCTGTGATGCAAGGGGCCCCTTTTAACGTGGTAGCTGTATCCGTTTGCAAAAAAAAA
AAAAAAAA

Homology of Contig U35_19157 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	Description
Rice v7	LOC_Os05g34320.2	532	protein\|beta-hexosaminidase precursor, putative, expressed
Brachypodium v1_2	Bradi2g25310.1	522
Arabidopsis v10	AT1G65590.1	535	\| Symbols: HEXO3, ATHEX1 \| beta-hexosaminidase 3 \| chr1:24385996-24390989 FORWARD LENGTH=535