barSeed - Barley Seed Development Database

Probe CUST_39554_PI390587928

Source Contig U35_8879

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_39554_PI390587928	Hv_44K_v2	GCGGGGCCCGGCGGCTTCCTCGCCTTCGTCGGCAACCTGCTCTTCCCCTTCATCGCCTTC	513	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_72928.2	1498	2e-24	1333 - 1392	100	60 / 60	minus	ABC41094 ABC41535
MLOC	MLOC_72928.1	1847	2e-24	1683 - 1742	100	60 / 60	minus	ABC41094 ABC41535
JLOC1	JLOC1_48538.1	2008	8e-25	107 - 166	100	60 / 60	plus
Harvest21	ABC20069	543	3e-25	454 - 513	100	60 / 60	plus
Harvest35	U35_8879	603	3e-25	514 - 573	100	60 / 60	plus

Contig Sequence (603 bp)

>U35_8879 603 Hv_44K_v2
AGCAGCCATGGCGCCCCCTTCCCTCTCCTCCTCCCACCTCCTCATCACCGCCTCCCTCCC
CAAGCCCTCCTCCATCCGCCCGCCGCGCCTCCCGGTCCCCTCAAAGCCCGTGCCCGCCCT
GCTCCTCGCGCTCGCCGCCTCGCCGGCCTTTCCCGCCCTCGCCGTCGATGCCCCCTCGCC
GCTGCCGCCCCAGGAGGCCGCCCCGCAGCTGCAGATGCAGGCCGAGGCGCCGACGCCCGC
CGCGAACCCCTTCGCCGACACCCTGCTCACCGCGCCCAAGCCCGGCTCCGCCGCCGCAGA
TATCCCCGACGGCGGCCAGTGGCGCTACAGCGAGTTCCTCGCGGCCGTCAAGAAGGGCAA
GGTCGAGCGCGTGCGCTTCTCCAGGACGGCGGCATGCTGCAGCTCACGGCCGTCGACGGC
CGCCGCGCCTCCGTCGTCGTGCCCAACGACCCCGACCTCATCGACATCCTCGCCACCAAC
GGCGTCGACATCTCCGTCGCCGAGGGCGACGCCGCGGGGCCCGGCGGCTTCCTCGCCTTC
GTCGGCAACCTGCTCTTCCCCTTCATCGCCTTCGCGGGGCTCTTCTTCCTCTTCCGCCGC
GCC

Homology of Contig U35_8879 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None