- Probe CUST_39553_PI390587928
- Source Contig U35_8880
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_39553_PI390587928 | Hv_44K_v2 | GGCAAAAAATGCCCTGGATCTTTTGTCACCTTTCAATTGAATTGAAATGCTTCTCTTAAA | 459 | GeneList: darkslateblue MasterList: None |
Probe Values
| 3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
|---|---|---|---|---|---|---|
| Normalized | 1.513 | 1.548 | 1.085 | 0.890 | 0.395 | 0.565 |
| Raw | 190.209 | 305.509 | 184.297 | 239.042 | 37.124 | 57.623 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| MLOC | MLOC_73506.10 | 582 | 2e-24 | 508 - 567 | 100 | 60 / 60 | plus | ABC21201 |
| JLOC1 | JLOC1_48946.2 | 1609 | 8e-25 | 1538 - 1597 | 100 | 60 / 60 | plus | |
| JLOC1 | JLOC1_48946.1 | 1613 | 8e-25 | 1542 - 1601 | 100 | 60 / 60 | plus | |
| Harvest35 | U35_8880 | 533 | 3e-25 | 460 - 519 | 100 | 60 / 60 | plus |
Contig Sequence (533 bp)
>U35_8880 533 Hv_44K_v2 AGGCTCCATACAGACCGGTCGAAGCTTCGATCAGAGCAGATTGGAAGTGGTGACAGGTCC GAGCGGATCAGAACATACAACTTCCCACAAGGGCGTGTCACCGACCATCGTGTCGGGGTC ACGCACCACTCCATAGTGGACGTCATGGAGGGAGAGAGCCTGGACGTCTTCATCGAGGCG CTGCTGCTGCAAGAAGAGATGGATGCAATTGCTTCGTTTGCTTCGTGAGCCCAAACTTTT GTGGATTTGTTCCTGGAGCGCCGAACCGCATGATAAACACACGGAACACTGAACCAGCGG ACACGAGAAACTTGTTGGGCTGTTCTGAGTTGTCATCCTATGTTTCTCCCTATCCTTGTT ATCTGTCCTGCTGTTGTTTCTCGACCAGCTGTTGGTTGTGGTATTTTTGCCTGTGTAATT TCCCGGGTGTTAATCCCAGACTTTTGCGGTTAATTCTTTGGCAAAAAATGCCCTGGATCT TTTGTCACCTTTCAATTGAATTGAAATGCTTCTCTTAAAAAAAAAAAAAAAAA
Homology of Contig U35_8880 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | None | |||
| Brachypodium v1_2 | None | |||
| Arabidopsis v10 | None |