barSeed - Barley Seed Development Database

Probe CUST_39549_PI390587928

Source Contig U35_8885

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_39549_PI390587928	Hv_44K_v2	CAGATTTGGAGTTAATCATACCCAACAGGGTGATGGAATAAAAGCAAAATTCAACATCAA	514	GeneList: plum1 MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	0.127	0.105	0.794	1.366	1.585	1.828
Raw	3.280	3.167	45.173	122.336	47.717	61.275

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
JLOC1	JLOC1_4938.1	2310	6e-21	2214 - 2272	97	57 / 59	plus
Harvest21	ABC18122	584	3e-25	515 - 574	100	60 / 60	plus	ABC18122
Harvest35	U35_8885	584	3e-25	515 - 574	100	60 / 60	plus

Contig Sequence (584 bp)

>U35_8885 584 Hv_44K_v2
GCTTGTCGGAGGCGTTCGGCGCCATCGGGCAGATCGAGTTCTACTACCGGCAGTTCCCGG
AGAACATGCGGAGCGTGGCCGGTGCGCTCTACTTCCTGGGGTTCGCGTTGGCGAGCTACT
CAAGCGGGCTGATGGTGATGGTGGTGCACCGGGCGACGCGCGGGCGGGACGGTCGGCCCG
ACTGGCTGGCGCAGGACCTCGACGAGGGTAGGGTGGACCTATTCTACCTGGTCACCGCCG
CGATCGCCGCCGTGAACCTCGTCTACTTTGTGTTCTGCGCACGGTGGTACAGGTTCAAGA
AGTCCGACGACGATGCCGCCCATGATGGCGCCGGAGACGTCGAGGTGGACGACGACAGCC
CCAAGAAGACCGGCGCCGGCTTGGCTTAGTTACTCTCTCCCTCCTTTCTGGGCTTAGTAT
ATACTCCGATGCATGCATAGATTGGTAGAGTGTGATGGATATATGTGCATATGTATCTTG
ATCGATAGATATGCTCTTGGGGAATCTATGTAATCAGATTTGGAGTTAATCATACCCAAC
AGGGTGATGGAATAAAAGCAAAATTCAACATCAAAAAAAAAAAA

Homology of Contig U35_8885 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None