barSeed - Barley Seed Development Database

Probe CUST_39548_PI390587928

Source Contig U35_8886

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_39548_PI390587928	Hv_44K_v2	GATTTCATGGGTACAAAGTTTCCTGATGCACTTAAGTGGATAGGCATCCAGTCCTGGGTA	1203	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK354882	2477	2e-24	1315 - 1374	100	60 / 60	plus	ABC21050
MLOC	MLOC_81757.2	2926	7e-23	1671 - 1730	98	59 / 60	plus	ABC21050
MLOC	MLOC_81757.1	5414	7e-23	1369 - 1428	98	59 / 60	plus	ABC07478 ABC21050
Harvest21	ABC17048	1263	3e-25	1204 - 1263	100	60 / 60	plus
Harvest35	U35_8886	1263	3e-25	1204 - 1263	100	60 / 60	plus

Contig Sequence (1263 bp)

>U35_8886 1263 Hv_44K_v2
GCCCATCGCAATTTGTTGCGCCGACGGCGACGAGCCACGGCGCCCATGCCCTACTGGCGT
CGGCACCGGAGCGGCGCTAATTGATTCCCTCTCATGTTGGCATAGGTTGTCAGAAATCAC
CAGCAGGGAAACAAAATGGTTCAGCTCTTTCTTCAAGTGCCGGCAGACGAGGGCAGTGTT
GATACAGATGCTGTGAGAGCGAGGAGATCTCTGCTGGATAAGGCCGAGTCTGTGATCAAG
TCGGTTGTAAGGTCTGGCGGCCGGTATGAGGCTCGGATGTGGCTGTGCAGTACGGTCTCG
TCGATTCATCTGCTCGATCCGCGTGACCAGCGGGACCTGTTCCTCGATCTCCTGGAGATG
AAGGACTCTAGGCGCGACGTTGCCGCTCGCCTGCTGCGGATGATTTTCGACAAGAAGCCT
GCCAAGGCTGGCTCTGTTTTAGCGAAAAACTGTCATATGCTGGAGAAGTTTTTCGAAGGA
AACCCTGAGCGGATACTGCAATGGTTTAGCCACTTTGCTGCTACTGGGGAGTCAGCACAC
AAAAAGGGTGCTCGGGCACTTGCTCAGTTTGCATTTGTGAATCGTGATGTTTGCTGGGAG
GAGCTTGAGTGGAAAGGCAGGCATGGTCAGTCTCCTGCTGTTGTTGCTACTAAGCCTCAT
TACTTTCGTGATCTTGATGTTCTCCAGACAGTGGAAAATTTCCTTGAATATGTCCCAGAC
TTTTGGTCTTCAGAAGAGCTTGCTGATTCTGTCAAAGATGGTGAAATACTGCAAATTGAT
ACAGAATATTTTGTAGATCAGTTTGTCTATTTGATGTATGAGGGGAATTTCAAAGATGTG
TGGCAAGTAGTTGAAGATTTTCTGATGGAGGAGCAGTTTTCCACTCTGTCTCAGTATATT
CTTATTCATCTTGACGAACAAAGGCTTCTTCGTTTCTTAAAAACATTAGGGAAGTTCATC
AGTCCGAATGCACAGTGCAAAAAGTTAGCATTCCCATGCTGCTGGCTTGAGGTTCTTTTG
TCGGCACATATTGATCAAATATCTCTTGATGAACTTATCCTATTGAACTGTGTCATTGTC
AAGGGTAGGCAACTTTGGCACCTCATGAACGACGAAGAACATGAGGAAGAACGAGGGAGG
ATGGACGAGGTTGTGAGGACCATGAATGACTTGACTGATGCTGATCACTTTGCTCTCATA
AAGGATTTCATGGGTACAAAGTTTCCTGATGCACTTAAGTGGATAGGCATCCAGTCCTGG
GTA

Homology of Contig U35_8886 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os01g67170.1	510	0.0	protein\|expressed protein
Brachypodium v1_2	Bradi2g57597.1	493	0.0
Arabidopsis v10	AT5G48340.1	510	5e-113	unknown protein; Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). \| chr5:19590785-19592487 FORWARD LENGTH=510