barSeed - Barley Seed Development Database

Probe CUST_39536_PI390587928

Source Contig U35_8898

barSeed

Links

Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_39536_PI390587928	Hv_44K_v2	GATTATGTGTTGGTGGCCATGTGGGTAAATAACCTGTATTCTGGTTCATGAATCCTCAAA	660	GeneList: darkslateblue MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.692	1.770	1.107	0.798	0.310	0.283
Raw	751.576	1212.682	661.004	743.789	103.434	101.793

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
JLOC1	JLOC1_33799.1	957	4e-23	817 - 873	100	57 / 57	plus
Harvest21	ABC17228	723	3e-25	661 - 720	100	60 / 60	plus	ABC17228
Harvest35	U35_8898	723	3e-25	661 - 720	100	60 / 60	plus

Contig Sequence (723 bp)

>U35_8898 723 Hv_44K_v2
GCCTTTTCATCATCAATAAGTCCGGTGGCCTCATATACTACAAGGACTATGGCTCGGCAG
GGAGAATGGACACCAACGACAGTTTACGCCTCGCGAGTCTCTGGCACTCTATGCACGCAA
TCTCCCAGCAGCTGTCCCCTACCACTGGCTGTACTGGCATTGACCTCTTACAAGCCCACA
ATTTTGACCTCCATTGCTTCCAATCCCTCACAGGGACGAAATTTTTCGTTGTATGCGAAA
CAGGCGCTCAAAATATGGAAATCCTGCTGAAAACAATATATGAGCTGTACACTGAGTTTG
TTTTGAAGAACCCATTCTACGAGATGGAAATGCCGATCCGGTGTGAGCTCTTTGACCTCA
ACCTAGCCCAGGTCATCCAGAAGGACCGTGTCGCACTTCTGGGCCGGTGAAGCATGAAAG
GAACATACGGAGCACCGTCTCTTGCAATCTCGTGTGTATTTTTCTACCATCTTTGTATTT
GGTCACCTAGGACATGTTTCATCTTGAAAGTGATTCTGGCTCATAACATGAATGCGGTAC
AGACTTTCATATCTGTAAATCTGATATACAACGCTGGGTTACAGCATTCCCAAGACAGAC
AATGTGTGTAGACTTTGACATTGCTCAGTTTGAATTTGCATGCCTCCGTGATTTGAACAA
GATTATGTGTTGGTGGCCATGTGGGTAAATAACCTGTATTCTGGTTCATGAATCCTCAAA
TAC

Homology of Contig U35_8898 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os07g27150.3	144	7e-88	protein\|trafficking protein particle complex subunit 4, putative, expressed
Brachypodium v1_2	Bradi1g56290.1	144	1e-94
Arabidopsis v10	AT5G02280.1	141	1e-74	SNARE-like superfamily protein \| chr5:469377-470129 FORWARD LENGTH=141