- Probe CUST_39531_PI390587928
- Source Contig U35_13903
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_39531_PI390587928 | Hv_44K_v2 | CTTAGGTAGGTAAAACATCCAAGCGATTGCTGGGCATGTTTTGTTAATATATCTCTAAAT | 60 | GeneList: greenyellow MasterList: None |
Probe Values
| 3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
|---|---|---|---|---|---|---|
| Normalized | 6.979 | 5.568 | 1.216 | 0.770 | 0.230 | 0.298 |
| Raw | 324.925 | 431.758 | 77.651 | 85.590 | 7.026 | 11.317 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| Harvest21 | ABC01021 | 181 | 3e-25 | 61 - 120 | 100 | 60 / 60 | plus | ABC01021 |
| Harvest35 | U35_13903 | 181 | 3e-25 | 61 - 120 | 100 | 60 / 60 | plus |
Contig Sequence (181 bp)
>U35_13903 181 Hv_44K_v2 GCACGAGGCTCTAAATATATTGACAAAACATGCCCAGCAATCGCTTGGATGCGATGCGGA CTTAGGTAGGTAAAACATCCAAGCGATTGCTGGGCATGTTTTGTTAATATATCTCTAAAT ATATTGAGTATACCCATTTGGCAAAGACCAAAAAAAAAAAAAGAAAAAAACCTGGGGGGG G
Homology of Contig U35_13903 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | None | |||
| Brachypodium v1_2 | None | |||
| Arabidopsis v10 | None |