barSeed - Barley Seed Development Database

Probe CUST_39526_PI390587928

Source Contig U35_13908

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_39526_PI390587928	Hv_44K_v2	AGACAACGAACGCTGCGACGTGTTTGGTAATTGAGGATTCTGGTAATCTCGTTTTGGATA	995	GeneList: brown MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.743	1.797	1.137	0.831	0.358	0.654
Raw	298.987	457.876	259.314	310.342	46.416	90.802

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
JLOC1	JLOC1_4251.1	1164	8e-25	1073 - 1132	100	60 / 60	plus
Harvest21	ABC00093	1058	3e-25	996 - 1055	100	60 / 60	plus	ABC00093
Harvest35	U35_13908	1058	3e-25	996 - 1055	100	60 / 60	plus
Harvest35	U35_38610	646	4e-24	17 - 74	100	58 / 58	minus

Contig Sequence (1058 bp)

>U35_13908 1058 Hv_44K_v2
CTCCAAAGGCAAGTAGGCAACCACACCTCCCTCTGCGCCTCCCTAACCTCTACTCGCTTG
TGCTTTGGGCGATTCAACCCGAGGAGAGAAGAGGAGAAGAGAGGGGAGGAGGCGGCGGTG
GAGGAGAAGTTTGGTAGGGAGATCGATGGGGCTGTCGTTCGGGACGCTGTTCGGGGCGCT
GTTCGCCAAGAAGGAGATGCGGATCCTGATGGTCGGGCTCGACGCCGCCGGGAAGACCAC
CATCCTGTACAAGCTCAAGCTCGGCGAGATCGTCACCACCATCCCCACCATCGGGTTCAA
CGTGGAGACAGTAGAGTATAAGAACATCAGCTTCACTGTTTGGGATGTCGGGGGCCAGGA
CAAGATAAGGCCTTTGTGGAGGCACTACTTCCAGAACACTCAGGGCCTTATCTTTGTTGT
TGACAGCAACGACAGAGACCGTATTGCTGAGGCAAGAGATGAGCTCCACAGGATGCTGAA
TGAGGACGAGCTGCGCAATGCTGTATTGCTTGTTTTTGCTAACAAGCAAGATCTTCCCAA
TGCCATGAATGCTGCTGAAATAACAGATAAGCTTGGTCTACACTCTCTGCGTCAGCGACA
CTGGTATATCCAGAGTGCTTGCGCCACAAGTGGAGAGGGTCTGTATGAAGGGCTGGACTG
GCTCTCCAACAATATAGCCAGCAAGTCCTGAAGGCAGAAGCAACTAGCGTCTGGACAAAT
GACTGGAATATGTAGGCATGTTAAAATGCTGCCAGGGTGTTGACATGTCTTTGTAAGCTC
GATCTTTGAGCTGTTATCACACTGTTACTATGTTGTATCAATGATTGAATGTACACACGA
GGAAACCCTTTAAGCTACAGTGAAAATGATACCATGTCAGGTGCTCCTGGCCTGAGCCTG
ATGAGCGATGATGATCCTGCCCTCGTTTTGTGAGCCGAGAAGTAGTCTGCACGTGATTAA
TCTCATTCCTGCGTACAATTGATTTTTGTGTACCTAGACAACGAACGCTGCGACGTGTTT
GGTAATTGAGGATTCTGGTAATCTCGTTTTGGATAAAA

Homology of Contig U35_13908 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os01g59790.3	182	3e-119	protein\|ADP-ribosylation factor, putative, expressed
Brachypodium v1_2	Bradi4g43910.1	182	8e-126
Arabidopsis v10	AT2G47170.1	181	8e-122	\| Symbols: ARF1A1C \| Ras-related small GTP-binding family protein \| chr2:19367264-19368518 FORWARD LENGTH=181