barSeed - Barley Seed Development Database

Probe CUST_39516_PI390587928

Source Contig U35_13918

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_39516_PI390587928	Hv_44K_v2	AGCATCTTCTATGCTGTCTATACTATGTCTCACGTTTCTTCCTTTGTGAACAAAGCTATT	668	GeneList: blue MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.731	1.607	1.079	0.853	0.358	0.382
Raw	2773.110	4061.250	2354.113	2981.781	429.404	508.138

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_71991.1	651	2e-24	490 - 549	100	60 / 60	plus	ABC00027 ABC00104 ABC00652 ABC00847 ABC29140
JLOC1	JLOC1_47881.1	752	8e-25	588 - 647	100	60 / 60	plus
Harvest21	ABC00652	1151	3e-25	1071 - 1130	100	60 / 60	plus	ABC00652
Harvest35	U35_13918	749	3e-25	669 - 728	100	60 / 60	plus

Contig Sequence (749 bp)

>U35_13918 749 Hv_44K_v2
AGTTTTAGATTAACTTAGTGTCCCTGTGATGTGATGTGGATGTTTTGGTTTGCTGTGACA
TCCATGATGGTAGTGGATCTGGTTGGTTCTAGATGTTAGATTGTAGATTAGATTGGTGTC
CCTGTGATGTGAATCTTTTGGTTTGCAGTGACATCGATGTTGGTGGTGGAAAAAAAAAAA
AAAAAAAAAACCCTCTCCCACTAACCCTAGCCAAGCTCTTCACATCGGCGGCGGCGGCGG
CGGCGGCAGCGAAGAAGGAGAAGAAGAAGAAGAAGAAGAGGAAGAAAGATGATCTACGAC
GTGAACTCCCCCCTGTTCCGCTCCTTCCTCAGCCAGAAGGGCGGCGCGTCCTCCGACAAG
AGGAAAATGGAAGAGCAGAAGCCGAAGGACCAGAGGTTCAAGGCCAACGAGAACAAGCCT
GTAATGAACGAATGACCATCCTTCGGACAGTCCAGTGCCTGCAAGGCCTAGCTGCCAATC
ATGTGACTCCTATGTTAAAATGGGTGGTGTGAACATTTGCTTGGTCGTTCTGAAAACTAT
CCAAGTATCCAGTACTGTGTTTTGAGTTCCTATATCTGCACTGCATGCCTGGAATGATAA
ATCAGTAGATTTTATCCTAAGATGTGTTCTCGTGGTTTTGGAATCCACTTCTATATGGTG
ATTCGTGTAGCATCTTCTATGCTGTCTATACTATGTCTCACGTTTCTTCCTTTGTGAACA
AAGCTATTTCTCAAAAAAAAAAAAAAAAA

Homology of Contig U35_13918 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None