barSeed - Barley Seed Development Database

Probe CUST_39495_PI390587928

Source Contig U35_13930

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_39495_PI390587928	Hv_44K_v2	TGTTTTGAGTTCCTATATCTGCACTGCATGCCTGGAATGATAAATCAGTAGATTTTATCC	367	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_71991.1	651	2e-24	379 - 438	100	60 / 60	plus	ABC00027 ABC00104 ABC00652 ABC00847 ABC29140
MLOC	AK354022	1281	6e-24	1024 - 1082	100	59 / 59	plus	ABC00027 ABC00104 ABC00652 ABC00847 ABC29140
MLOC	AK353908	1209	6e-24	1147 - 1205	100	59 / 59	plus	ABC00027 ABC00104 ABC00652 ABC00847 ABC29140
MLOC	MLOC_77982.1	1512	6e-24	1022 - 1080	100	59 / 59	plus	ABC00027 ABC00104 ABC00652 ABC00847 ABC29140
JLOC1	JLOC1_47881.1	752	8e-25	477 - 536	100	60 / 60	plus
JLOC1	JLOC1_51982.1	1285	3e-24	985 - 1043	100	59 / 59	plus
Harvest21	ABC00652	1151	3e-25	951 - 1010	100	60 / 60	plus	ABC00652
Harvest21	ABC00104	531	3e-25	353 - 412	100	60 / 60	plus	ABC00104
Harvest21	ABC00027	421	3e-25	345 - 404	100	60 / 60	plus	ABC00027
Harvest21	ABC00847	1298	1e-24	1064 - 1122	100	59 / 59	plus	ABC00847
Harvest35	U35_13956	1042	3e-25	864 - 923	100	60 / 60	plus
Harvest35	U35_13930	456	3e-25	368 - 427	100	60 / 60	plus
Harvest35	U35_13918	749	3e-25	558 - 617	100	60 / 60	plus
Harvest35	U35_13958	1298	1e-24	1064 - 1122	100	59 / 59	plus

Contig Sequence (456 bp)

>U35_13930 456 Hv_44K_v2
CGGGGGTGCGTCTCACCCTCTCCCACGAACCCTAGCCAAGCTCTTCATATCGGCGGCGGC
GGCGGCGGCGGCGGCAGCGAAGAAGAAGAAGAAGAAAGATGATCTACGACGTGAACTCCC
CCCTGTTCCGCTCCTTCCTCAGCCAGAAGGGCGGCGCGTCCTCCGACAAGAGGAAAATGG
AAGAGCAGAAGCCGAAGGACCAGAGGTTCAAGGCCAACGAGAACAAGCCTGTAATGAACG
AATGACCATCCTTCGGACAGTCCAGTGCCTGCAAGGCCTAGCTGCCAATCATGTGACTCC
TATGTTAAAATGGGTGGTGTGAACATTTGCTTGGTCGTTCTGAAAACTATCCAAGTATCC
AGTACTGTGTTTTGAGTTCCTATATCTGCACTGCATGCCTGGAATGATAAATCAGTAGAT
TTTATCCAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

Homology of Contig U35_13930 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None