barSeed - Barley Seed Development Database

Probe CUST_39494_PI390587928

Source Contig U35_13931

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_39494_PI390587928	Hv_44K_v2	TCGGACTATGAGATAATTTACTCGAGTAATGATTATGGACCACTGGAGTAATGATTATGG	918	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK364650	1070	2e-24	944 - 1003	100	60 / 60	plus	ABC00328
MLOC	MLOC_44260.1	2331	2e-24	1743 - 1802	100	60 / 60	minus	ABC00328
JLOC1	JLOC1_28668.1	2205	8e-25	527 - 586	100	60 / 60	plus
Harvest21	ABC00328	1070	3e-25	919 - 978	100	60 / 60	plus	ABC00328
Harvest35	U35_13931	1070	3e-25	919 - 978	100	60 / 60	plus

Contig Sequence (1070 bp)

>U35_13931 1070 Hv_44K_v2
GCGAGATCCTCGACGCCAAGATCATCAACGACCGTGAGACGGGGAGGTCGCGCGGGTTCG
GGTTCGTGACGTTCGGGAGCGAGGAGTCGATGCGCCAGGCCATCGAGGAGATGAACGACA
CGCAGATCCCAGACGGAGATCACGACCCGTTCGATCCGCCCGCGACCTTTCCCCCCTCCA
GCCCCGCGAGCGACACGCAGATCCCAGACGGAGATCACGACCCGTCGGCGGCTGTCTGCG
CCGCAGCGTCGCTTCCCGAGTCCGGCGATTCGGTCGCGCGGTTCCAATCCCCCACTGGCG
TCTCCCGAATAGCCAAAATTGTCGCGCCCCCGACGGCCGCGGGGATGAACCGGATCCAGT
CCGTCTCGCTGCAGGGCGACGCGGCCGAGGCGGGCGCGGCGCCCGACCCCGCGGCGCTGG
CGCGGTGGGCGCGGGCGTTCTGTATCATCCGCTTCGACCTGGAGCGCGGGCAGCTGGTCG
AGGCCTGCTTCCCGCCGGACGCGCTCGCCCACGGCAGCCTCGACCGCCTCGTCGCCTTGT
CTTTCTTTTCCATGCCTCGACGTGAACCAGATCCAGCCGTGGTTCTCGCCGTGGACCGAT
ATGACAGCAATGGGTGCATGAGGCGCCTCACCGCGTACGTGGAAGCCGTCGAGCTGCTCT
CTGCGGGCGCCGACACCGAGGGCGTCTTCCCCGGGTATGTCCACACCTTCACCGCCACCG
CCACCATCCACCAATTCACCGCTGAAGATCTCGCAGGTGCTGCAATGATGCAACAGCTGA
AAAGGGCGCTTAACAATTACAGTTTCTCCGGCCGAACTGCTTATATACCACTTCCATAGA
CCTTCGTGATTGAGAGGTCACTGTCCAATTAGTGCAGTAGTTGCTTCAGCAATAGAATAT
CCTCGTATTGAGTCAGTATCGGACTATGAGATAATTTACTCGAGTAATGATTATGGACCA
CTGGAGTAATGATTATGGATCATTTTATGTATTGTACAGTCGTTTGTGGATTGGTGATTT
TGACCTTAGATNTGTTCTTAAATGATTTTTATTGCCAAAAAAAAGGGGGG

Homology of Contig U35_13931 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None