barSeed - Barley Seed Development Database

Probe CUST_39490_PI390587928

Source Contig U35_13935

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_39490_PI390587928	Hv_44K_v2	CTGGAGGCATTACTTCCAGAACACACAGGGTCTTATTTTTGTTGTGGACAGCAATGATAG	502	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK356208	916	2e-24	397 - 456	100	60 / 60	plus	ABC00093 ABC00181 ABC00395 ABC00652
MLOC	AK249729.1	1150	2e-24	533 - 592	100	60 / 60	plus	ABC00093 ABC00181 ABC00395 ABC00652
MLOC	MLOC_15918.1	611	2e-24	409 - 468	100	60 / 60	plus	ABC00093 ABC00181 ABC00395 ABC00652
JLOC1	JLOC1_10944.1	899	8e-25	208 - 267	100	60 / 60	plus
Harvest21	ABC00181	1031	3e-25	495 - 554	100	60 / 60	plus	ABC00181
Harvest35	U35_13935	1039	3e-25	503 - 562	100	60 / 60	plus

Contig Sequence (1039 bp)

>U35_13935 1039 Hv_44K_v2
CCTCGCCGTAGTACCCGCGATACCCATACGCATGACCAAACTGCCATCCTTATCAAGGAG
GATCCCCACTACCCCACCCCATTTCCTCCCCAGCCGGTAGGCACGACTATTATCTCCCTG
TCTGTTCCCGTTGCCACAGAGGAATCGGTCATCGATTTTCTGCCGAGATCACCGATCCAA
AGATTGGATCTGACATTCGAATTGCGTGGTTCTCGGCGGCGCTAGATCTGCGACCGGTCA
GCGTGGGGTGATCGGAAGAGTGTAAGGGCGAGATGGGGCTCGCGTTCGGGAAGCTCTTCA
GCCGGCTCTTCGCCAAGAAGGAGATGCGGATCCTCATGGTCGGTCTTGATGCCGCCGGAA
AGACTACCATCCTTTACAAGCTTAAGCTCGGCGAGATCGTTACCACCATCCCAACTATCG
GGTTCAATGTTGAAACTGTCGAGTACAAGAACATTAGCTTCACTGTTTGGGACGTTGGCG
GTCAGGACAAGATCAGACCTCTCTGGAGGCATTACTTCCAGAACACACAGGGTCTTATTT
TTGTTGTGGACAGCAATGATAGGGACCGTGTTGTTGAAGCCAGAGATGAGCTCCACAGGA
TGCTGAATGAGGATGAGTTGCGCGATGCTGTGTTGCTTGTCTTTGCCAACAAGCAAGATC
TTCCAAATGCTATGAATGCTGCTGAAATTACTGATAAGCTTGGATTACATTCCCTTCGCC
AACGCCACTGGTATATCCAGAGCACATGTGCTACATCCGGTGAGGGTCTGTATGAGGGCC
TGGACTGGCTCTCCAATAACATTGCCAGCAAGGCTTGAGGCTTGGTATTTTGACTGCAGA
GCTGGCTAGGAGTTGTGGATGTACCATTTCATACTTAAGACGAATTATTTGTTCCAATCT
AATATGTGCCTTTGACAAGCTCAGTATTTTTGTAATGATGTCCCAGTTAAATGTTTCCTT
TCGGATGATCTCTCTTGTTGGTATTTTGCAATGATTTCAAATATCATACTCCTTTCGTTC
CTAAAAAAAAAAAAAAAAA

Homology of Contig U35_13935 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os07g12170.1	305	6e-125	protein\|ADP-ribosylation factor, putative, expressed
Brachypodium v1_2	Bradi1g53867.1	182	2e-125
Arabidopsis v10	AT2G47170.1	181	1e-126	\| Symbols: ARF1A1C \| Ras-related small GTP-binding family protein \| chr2:19367264-19368518 FORWARD LENGTH=181