barSeed - Barley Seed Development Database

Probe CUST_39488_PI390587928

Source Contig U35_13937

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_39488_PI390587928	Hv_44K_v2	TGTTGTTACTTCCTGTGATGTGTCAATGCTAAGCCGTGTGAAAATCGAGATGCTACCGCT	599	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_16191.1	413	2e-24	132 - 191	100	60 / 60	plus	ABC00350
JLOC1	JLOC1_11134.1	340	8e-25	133 - 192	100	60 / 60	plus
Harvest21	ABC00350	660	3e-25	600 - 659	100	60 / 60	plus	ABC00350
Harvest35	U35_47218	611	3e-25	168 - 227	100	60 / 60	minus
Harvest35	U35_13937	689	3e-25	600 - 659	100	60 / 60	plus

Contig Sequence (689 bp)

>U35_13937 689 Hv_44K_v2
GCAGCGCCCTCCAACCTCACACAGATCCCGGCCATCTCCTCTGTTCCAGCGACAACCGCA
CCAGCGGCTCCACCCTCCACCTCGACCCGAAGATGGCCATCGCCGGCAGCGGGAGGGGTA
AGGCGAAGCCCGCCGCCAGCGCCAAGTCCGTGTCCCGGTCGTCCAAGGCCGGCCTCCAGT
TCCCCGTCGGCCGCGTCGCCAGGTACCTCAAGGTCGGCAAGTACGCGGAGCGCGTCGGTG
CCGGTGCCCCCGTCTACCTCGCCGCCGTCCTCGAGTACCTCGCCGCAGAGACTCTGGAGC
TCGCCGGCAACGCGGCGCGGGACAACAAGAAGAACCGGATCGTGCCGCGCCACATCCAGC
TGGCGGTGCGCAACGACGAGGAGCTGAGCCGGCTGCTGGGCTCGGTCACCATCGCCGCCG
GCGGGGTGCTCCCCAGCATCCACACCACGCTCCTCCCCAAGAAGGCCGGCAAGGCCAAAG
GCGACATCGGCTCCGCGTCCCAGGAGTTCTAGATTAGATCGTGAATGTTTTGGTTTGCTG
TGGCATCGATGTTGGTGGTGGGTCTGGTTGCAATGGATTGCAGCTTGCAATCTTGTTCTT
GTTGTTACTTCCTGTGATGTGTCAATGCTAAGCCGTGTGAAAATCGAGATGCTACCGCTC
CTTCCGTCTCTGAAAAAAAAAAAAAAAAA

Homology of Contig U35_13937 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os12g34510.1	139	5e-51	protein\|Core histone H2A/H2B/H3/H4 domain containing protein, putative, expressed
Brachypodium v1_2	None
Arabidopsis v10	None