barSeed - Barley Seed Development Database

Probe CUST_39485_PI390587928

Source Contig U35_25910

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_39485_PI390587928	Hv_44K_v2	ATCACCTCGCTCCAGATCCAGCACCACCACCTCAAGGTGGATCTCGGGAGGTCCGACTAC	294	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK367852	3301	2e-24	339 - 398	100	60 / 60	plus	None
MLOC	MLOC_5625.1	161	2e-24	74 - 133	100	60 / 60	plus	None
Harvest21	ABC22381	517	3e-25	295 - 354	100	60 / 60	plus
Harvest35	U35_25910	518	3e-25	295 - 354	100	60 / 60	plus

Contig Sequence (518 bp)

>U35_25910 518 Hv_44K_v2
ACATCGGTCCGATTAAGCATTAGGCGCGCGCCGGACCTCCACCCACCTCCTTCTAGAACC
CTCCAGAACCTTCCTTCCCCCGCAGCCCTGCTCCCCCCGAACTCCGGCGAGGGGCGGCGG
CGCGCCCCAGAGCCACGGCCTTCGCCTCCCGCGGCGGGGGCGGAGGAGCCAAGGGAGAGA
CTGCCGGCGGCGGCGGCGGCGGCGGCGCCGGGGATGAAGTACCCGCCCATCCCGCCGCGC
CGGGCCGCCTCCTGCGGCTGCGGGTACCTGGCCGCCTTCGTGGCCCTCATCGTCATCACC
TCGCTCCAGATCCAGCACCACCACCTCAAGGTGGATCTCGGGAGGTCCGACTACGCCGCG
GCCACGGCCACGCAGCGGCGGGAGGGGAACGGGAACGGCGGCAAGCAGGGGACGGCGGCG
GCGGCGTCCCGCTGGAACCGGAGGACCGGCGCCGAGGGCCTGCCGCGCGGGATCGTCGAG
ACCAGCTCCGACATGTTCCTCCGCCCGCTCTGGGACTC

Homology of Contig U35_25910 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None