barSeed - Barley Seed Development Database

Probe CUST_39481_PI390587928

Source Contig U35_25917

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_39481_PI390587928	Hv_44K_v2	CGCGACCTGCTCCGCCTCAACCTGCAGACCTTCGCCAAGGTTCCGCTCAACTCCCACACG	347	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK357677	1591	2e-24	762 - 821	100	60 / 60	plus	ABC17679
MLOC	AK353958	1590	2e-24	712 - 771	100	60 / 60	plus	ABC17679
MLOC	MLOC_72037.1	3446	2e-24	515 - 574	100	60 / 60	minus	None
JLOC1	JLOC1_47917.2	1086	8e-25	709 - 768	100	60 / 60	plus
JLOC1	JLOC1_47917.1	1298	8e-25	702 - 761	100	60 / 60	plus
Harvest21	ABC26027	407	3e-25	348 - 407	100	60 / 60	plus
Harvest35	U35_25917	407	3e-25	348 - 407	100	60 / 60	plus

Contig Sequence (407 bp)

>U35_25917 407 Hv_44K_v2
GGCCACTTCCACTGCTTATGAGAGCCCTCACTGCCGCCACAATATCCTCCCCGATCCGCG
CCCTCCTCCTCCTCCACCTCTCCTTCCCTTCAACCCTCCGCCTCCCTCTCACCATGAACC
CCTCCTCCTCCTCTGGCTACCGCTCCCATGCTGCTGCCTCCGCCTCCACACACCAGCCGC
GCGGTGGCCGTGGTGGCGCCAGGCGACCGGGTGGCCGTGGTGGCGGTGGCGGTGGTGGTG
ACGGCAGAGACCGCATCGACGCCCTTGGCCGCCTCCTGACGAGGGTCTTACGGCACATGG
CACCGGAGCTGAGGCTGGACATGAGGAGCGATGGCTACGTGCGGGTGCGCGACCTGCTCC
GCCTCAACCTGCAGACCTTCGCCAAGGTTCCGCTCAACTCCCACACG

Homology of Contig U35_25917 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None