barSeed - Barley Seed Development Database

Probe CUST_39479_PI390587928

Source Contig U35_25919

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_39479_PI390587928	Hv_44K_v2	ATCTAAGTCATTGTGGGCTGGAACATGACATAAAAACAGCGCCAGCAAGCTGGATCATAG	497	GeneList: blue MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.583	1.557	1.328	1.079	0.470	0.419
Raw	23.232	37.786	26.838	33.715	3.845	4.148

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_73693.2	2544	2e-24	1797 - 1856	100	60 / 60	plus	None
MLOC	MLOC_73693.1	2395	2e-24	1801 - 1860	100	60 / 60	plus	None
JLOC1	JLOC1_49067.1	2535	8e-25	1801 - 1860	100	60 / 60	plus
Harvest21	ABC24728	635	3e-25	498 - 557	100	60 / 60	plus
Harvest35	U35_25919	635	3e-25	498 - 557	100	60 / 60	plus

Contig Sequence (635 bp)

>U35_25919 635 Hv_44K_v2
GATTGTCTCTGTAATAAGGAAATTTGGAGGTTGTATTCTTTCTAAAGTGCCACCCTGTCC
ATTTGATAAAAAAAGCAAGCTTGCAGAGCTTGTGAGGTGGAAGCCTCCTGTAGTTCTTTC
CCCTAAAAAGGTATCAACAGCTAAGTTCTTGTATGGTTGTGCTACCGATTCCTGGATTTT
AAATTCCAATTGGCTTTTTGATTCTCTTCAAGCTGGTTTACTGTTGCCACCTGGAAAGTA
CTTAATTCGACAAAGGCATACAGTGGAGATTTCAACATTTGGCCAATCAGTTTACCTAAG
AAATAATAAATTGGTATTTCATGGAGTAGGATTCTTGATCCATGGCAAAATCAGCTTCTG
TTCAAAATTCTCGAACATTATCAAGCATGGAGGTGGCCAAGTTTTTGTATCTCTTCAAGG
ATTAATTGAAAGCTTGGAGGATAAGCATTGCTCGCGTGGAATCATTCTTGTTGCAAATGA
GGCGAGCGCATCACGCCATCTAAGTCATTGTGGGCTGGAACATGACATAAAAACAGCGCC
AGCAAGCTGGATCATAGGCAGTCTGTTTTCCGGGAAGCTGAGTCCCCTGAAGAAAGACCG
CTGTGCTGCGTTTCGTCGGATTAAGATGCCATCAT

Homology of Contig U35_25919 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os03g59650.2	884	1e-108	protein\|BRCA1 C Terminus domain containing protein, expressed
Brachypodium v1_2	Bradi1g04292.1	967	6e-122
Arabidopsis v10	None