barSeed - Barley Seed Development Database

Probe CUST_39471_PI390587928

Source Contig U35_13947

barSeed

Links

Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_39471_PI390587928	Hv_44K_v2	GTAATTTATCTCTGAATTCTGCCGGGAATGAGTAAAGATGCTAATCCTTCCAATCAAAAA	639	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_7923.1	212	3e-22	97 - 152	100	56 / 56	minus	ABC00286
JLOC1	JLOC1_5242.1	211	1e-22	96 - 151	100	56 / 56	minus
Harvest21	ABC00978	709	3e-25	638 - 697	100	60 / 60	plus
Harvest21	ABC00286	708	3e-25	637 - 696	100	60 / 60	plus	ABC00286
Harvest35	U35_13947	720	3e-25	640 - 699	100	60 / 60	plus

Contig Sequence (720 bp)

>U35_13947 720 Hv_44K_v2
GCATTCCGATCCAGCACCACCGGCGCCAACACCACACGTCGTGAGCCCTCGTCGCCGGAG
AAGTAGCACGCAAGATGGCCGGAAGGAAGGGAGGCGACAGGAAGAAGTCGGTGACCAGGT
CCGTGAAGGCCGGGCTCCAGTTCCCCGTCGGCCGCATAGGGCGCTACCTCAAGAAGGGCC
GCTACGCGCAGCGCGTCGGCTCCGGCGCCCCAGTATACCTTGCCGCCGTCCTCGAGTACC
TCGCCGCTGAGCTCCTAGAGCTTGCCGGCAACGCGGCGAAGGACAACAAGAAGACCCGCA
TCATCCCGCGCCACCTTCTTCTCGCCGTCCGCAACGACCAGGAACTCGGCAAGCTGCTCG
CCGGCGTCACCATTGCTCACGGCGGCGTGATCCCCAACATCAACTCCGTGCTGCTCCCCA
AGAAGTCCCCCGCCGCGGCCGAGAAGGAGGCGAAGTCGCCCAAGAAGAAGGCCGACACCA
AGTCTCCCAAGAAGAAGGCCACGAAGGAGTAGACTAGCTGACACTGCTTAGTTCCATATC
CGGGAGCGAGGATGAGAACACTGTTGGTTGGATCCTTTGTGTAATTGCATAGTCTGTAGT
GGCTGTTTCATTAGTTCGATGAACAAGCCAGCAAGGGCTGTAATTTATCTCTGAATTCTG
CCGGGAATGAGTAAAGATGCTAATCCTTCCAATCAAAAAAAAAAAAAAAAATGGCTGCTT

Homology of Contig U35_13947 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os05g02300.1	157	7e-52	protein\|Core histone H2A/H2B/H3/H4 domain containing protein, putative, expressed
Brachypodium v1_2	Bradi4g28560.1	155	3e-52
Arabidopsis v10	None