barSeed - Barley Seed Development Database

Probe CUST_39465_PI390587928

Source Contig U35_25924

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_39465_PI390587928	Hv_44K_v2	TTTCTTCAGGGGCTGTTGGTTTATGGTTTGGAAGGGAGAGAAATTTATAGAAATACATTG	536	GeneList: blue MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.342	1.214	1.018	0.838	0.336	0.353
Raw	171.991	221.279	178.892	228.456	32.541	38.155

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK366869	1947	2e-24	1231 - 1290	100	60 / 60	plus	ABC13198
JLOC1	JLOC1_51650.1	2366	6e-21	197 - 249	100	53 / 53	plus
Harvest21	ABC24493	597	3e-25	537 - 596	100	60 / 60	plus
Harvest35	U35_25924	599	3e-25	537 - 596	100	60 / 60	plus

Contig Sequence (599 bp)

>U35_25924 599 Hv_44K_v2
CTCTTATGTTGGGTGATATAGTAATATCAGTGGAAACAGCTGCAAGGCAAGCTGAGGCGA
GAGGTCATACCCTTCTTGATGAACTGCGGACACTGGTGGTTCGTGGCCTGTTACGTCTTC
TGGGTTTTGACCGTCAGACTAGTGATGAGGCTGCAATGGAAATGGAGAAGGAGGAGCTGC
TCATTTTAAAAAGTCTAAGGTGGAAAGGGAAAGGTCTTGCTAAGAACGCTCCTGATTTGA
GCAAGCCTCACACAGAAACATTGGATGGACAAGTAACAAACAGTCTAAAGAGAGCTGGCA
GCCTAAGATTTTATAGACCAAAGTTCAAATATATCTTCTGCGATATGGATGGTACATTGC
TCAACAGTAAAAGTCAAGTAACAGCAAGGAATGCAGAAGCTATAAAGGAAGCTAGGTCAA
GAGGAGTAAACATAATTATTGCCACAGGAAAGACGCGCCCAGCTGCCATTGATGCTCTTA
ATATGGTCGATTTATCTGGAAGAAATGGCATTGTTTCAGACTCTTCGCCTGGTATATTTC
TTCAGGGGCTGTTGGTTTATGGTTTGGAAGGGAGAGAAATTTATAGAAATACATTGAAC

Homology of Contig U35_25924 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os01g53720.1	543	3e-89	protein\|expressed protein
Brachypodium v1_2	Bradi2g49310.1	589	4e-89
Arabidopsis v10	AT2G25870.1	584	8e-61	haloacid dehalogenase-like hydrolase family protein \| chr2:11031159-11034302 FORWARD LENGTH=584