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Probe Details

Probe IDChipProbe Sequence (60 bp)Probe locationDifferentially Expressed
CUST_39461_PI390587928Hv_44K_v2ATTCTGGTTGGGGCTAGAAAAGATAAGGAAAGGCAAGTATGTTATTCAAGTCCCAAAAAA544GeneList: sienna3
MasterList: None



Probe Values

3 dpa4 dpa5 dpa6 dpa7 dpa8 dpa
Normalized 3.7762.6201.0110.5330.9170.816
Raw 28.74326.41010.5086.7613.7373.491



Probe Sequence's BLAST hits in Barley Unigene Datasets

DatasetHitHit LengthE-valuePosition on Hit% IdentityMatchDirectionProbes on Sequence
Harvest35U35_259286153e-25545 - 60410060 / 60plus



Contig Sequence (615 bp)

>U35_25928 615 Hv_44K_v2
GACGGGTACCTGATCCCCAAGGGCGCCACTGTGAACTTCATGGTGGCCGAGATGGGCAGG
GACGAACGGGAGTGGGAGAAGCCGATGGAGTTTGTGCCGGAGCGATTCTTGCCAGGCGGC
GATGGCGAGGGGGTGGATGTGGCCGGCAGCAGGGAGATCAGGATGATGCCGTTCGGCGTC
GGGAGGAGGATCTGCGCCGGACTCGGCGTCGCCATGCTTCACCTTGAGTACTTCGTGGCC
AATCTGGTTAGGGAGTTCGAGTGGCAGGAGGTTCCAGGCGACGAGGTGGACTTCGCCGAG
AAGCCGGAGTTCACCGTCGTCATGGCCAAGCCGCTATGCGTGAGGTTGGTGCCCCGAAGC
AGGAGCTAACGGTGCTTTAGAGTTTAGACAGCCACACTACTTGCTGAACCTGCTTGTCTG
AACTGAATGTTCATATGCATCTCAGTGGCTGATGTTCATAATTCATGGAATCTCATCTGA
TCATATTGACCCTTTTAATGCTTTTGAGTGGGACTGGATTCCCTCAAATGGCTAATCAGG
TGGTATTCTGGTTGGGGCTAGAAAAGATAAGGAAAGGCAAGTATGTTATTCAAGTCCCAA
AAAAAAAAAAAAAAA



Homology of Contig U35_25928 to Model Species (E-value threshold 1e-50)

Pseudo-peptide datasetHitHit lengthE-valueDescription
Rice v7LOC_Os10g37110.15241e-66protein|transposon protein, putative, unclassified, expressed
Brachypodium v1_2Bradi3g30520.15322e-70
Arabidopsis v10None