barSeed - Barley Seed Development Database

Probe CUST_39457_PI390587928

Source Contig U35_37902

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_39457_PI390587928	Hv_44K_v2	AATTGTTACTGGAAGATTCTCGCATAGATCAGTATCCAAAAGTGGCCAAGGGAGAGGCTA	374	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK360405	1880	2e-24	1430 - 1489	100	60 / 60	plus	ABC52572
MLOC	AK369600	1389	2e-24	909 - 968	100	60 / 60	plus	ABC52572
MLOC	MLOC_54335.4	2283	7e-23	1986 - 2045	98	59 / 60	minus	ABC52572
MLOC	MLOC_54335.3	2245	7e-23	1948 - 2007	98	59 / 60	minus	ABC52572
JLOC1	JLOC1_34972.1	1986	4e-23	120 - 179	98	59 / 60	plus
Harvest21	ABC33657	628	3e-25	375 - 434	100	60 / 60	plus
Harvest35	U35_37902	628	3e-25	375 - 434	100	60 / 60	plus

Contig Sequence (628 bp)

>U35_37902 628 Hv_44K_v2
GGGCTTCTTGGAGACAACGTCGACTTATGATAAGGTCCAAGCATTTAAATGCCCAGAGCT
GGCCGCGGAGCTTCGTAGGCCCCTGTCTTGTCAAGCTCGTCAGTGGATCTCTAGCAATAT
CGTCTTTGTGATCACCTTCTGTGTCCTGTCTGCAGCATTGCTCAGGATTCTATGGAGCAT
TTACCAGAGATGGGCATTGTCAAAGAGAGCCGAGCAAATATATGAGCAGGTATATGAGAT
CCTTGAAGATAATGCCATAAGTGCAAAGGTTGGCAACTCTGAATGCGAGCCTTGGGTGGT
CACCTCCTGGTTGCGTGATCATCTACTGTCTACCCGAGAGAGACGGAACACTTTGTTGTG
GAAGAAGGTGGAAGAATTGTTACTGGAAGATTCTCGCATAGATCAGTATCCAAAAGTGGC
CAAGGGAGAGGCTAAGGTTGTCTTGGAGTGGCAAGCTAGCGGGTCGCTGAGTGGGAAGTT
TAAGAAGATGCAAGGTGCAGCAGGGAAGGCAAGGAGGAGCAGCGTCGGCGCCATCAAACT
TGCTGAAGAAATATGCGGCAGCAGCAACATCAGCGGCAGTAGCAGAGACAAGAAGGAGCA
ATGTTCTTCAACTGGCAAAGAAGCAACT

Homology of Contig U35_37902 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os03g01016.2	367	2e-80	protein\|expressed protein
Brachypodium v1_2	Bradi1g78690.1	366	9e-88
Arabidopsis v10	None