barSeed - Barley Seed Development Database

Probe CUST_39453_PI390587928

Source Contig U35_37909

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_39453_PI390587928	Hv_44K_v2	CACATGTAGATAAAATATTTGTTCTATAGCAATGGTCTAAGTAGTTGCAACTGCTTTGCC	584	GeneList: orange MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	0.332	0.887	1.847	1.694	1.057	0.623
Raw	3.908	21.154	38.771	57.434	11.725	7.409

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
Harvest21	ABC33674	650	3e-25	585 - 644	100	60 / 60	plus
Harvest35	U35_37909	650	3e-25	585 - 644	100	60 / 60	plus

Contig Sequence (650 bp)

>U35_37909 650 Hv_44K_v2
GCAGAAGATATGTTCCACTGGCAAGCGACGATCATGGGTCCATCTGAAAGCCCATATGCT
GGTGGTGTATTTTTGGTTACTATTCACTTTCCCCCGGACTACCCATTCAAGCCACCCAAG
GTATGCAGTCGAGTGTATGCAATGATCTGAAATTATTCCTAGGAGGATACAACAGTGCTT
GCCTTTTCAACTCTCTAGCTCCTTGAGATTCCCCGAAGCCCTGTTAAGAAACTTCCTTGC
CAACGTCTTGCATTAATGCTCCTAAAAAAATTATTCAAGCTTAATTACTATAAATCTATC
GGACAAACTGTGTCAAGAGTCGGAGGAATGGTTCATCTATTAGCACGTCCCTTTTCTGTT
TGTGTATTAATCACTGGACCTGTATACCAAACTCTTGTTCTTGGCATGTACAGCGGATGA
TTCTTGCATGATGCATGTTCTAGTAATATTATGGTGATTGAATTGTGCTTATTGAGAAAA
TGAGCTAGTATGATAATTGAGATGCATGTTACATAACAATGATTACTTGCATGTGGTGGA
GGTTGACTAGGAGGGATTCATGTTATTTTTTTGTCCCATACTAGCACATGTAGATAAAAT
ATTTGTTCTATAGCAATGGTCTAAGTAGTTGCAACTGCTTTGCCAAATGT

Homology of Contig U35_37909 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None