barSeed - Barley Seed Development Database

Probe CUST_39451_PI390587928

Source Contig U35_13951

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_39451_PI390587928	Hv_44K_v2	GAATGTCAGAGATCTCTCTGACTGACAGCAAATTTCTGCTGCGTTGGCTGTCTTAAAAAA	667	GeneList: yellow MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	3.395	2.297	1.155	0.743	0.366	0.320
Raw	4213.840	4517.500	1925.023	1975.403	334.931	322.772

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
Harvest35	U35_13951	738	3e-25	668 - 727	100	60 / 60	plus
Harvest35	U35_36609	644	5e-23	55 - 110	100	56 / 56	minus

Contig Sequence (738 bp)

>U35_13951 738 Hv_44K_v2
GAACACACTTACACACTCCCGCCAACGCAACGCGCTCCCGCCTCCCCAAATCCAATCCCC
ATCGGCCATCGCCAAATCTCTCCGCGCCTCCAACACCATGGAAGCCTCAGGCGCCGGCGC
CGGCGCCATCCCGAGGGCGAAGAGGTACGTGGTGGGGCGCAAGCTCGGCGGCAGCCCCAG
GAAGAAGATGGTGGCGCGGTCCGTCAAGGCCGGGCTGCAGTTCCCCGTCGCCCGCATCGG
GCGCTTCCTCAAGAAGGGCCGGTACGCGCAGCGCGTCGGCCGGGGCGCCCCCGTCTACCT
CGCCTCCGTCCTCGAGTACCTCGCCGCCGAGATCCTGGAGCTCGCCGGGAACGCCGCCAA
GGACAACAAAAAGTCCCGCATCATGCCGCGCCACCTGCTGCTCGCCATCCGGAACGACCC
GGAGCTTGGAAAGCTGCTCGCCGGCGTCACCATCGCCCACGGCGGCGTGCTGCCCAACAT
CAACCCCGTGCTTCTCCCCAAGAAGATGGTCGAGAAGGAGCCCAAGTCGCCCAACAAGGC
CGCCAAGTTCCCCAAGAAGGCTTAGTCGATTACTGCCTAGTACTCTACTTCGTAATAGAA
TTAGTGTTCGTTGTTCTGGTAATGGTGTCGATCTAGTAATGCTCTGTCCTGCTTTGAAAA
AAAAAATGAATGTCAGAGATCTCTCTGACTGACAGCAAATTTCTGCTGCGTTGGCTGTCT
TAAAAAAAAAAAAAAAAA

Homology of Contig U35_13951 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os03g17100.1	160	7e-61	protein\|Core histone H2A/H2B/H3/H4 domain containing protein, putative, expressed
Brachypodium v1_2	Bradi1g66370.1	162	2e-59
Arabidopsis v10	AT5G59870.1	150	2e-52	\| Symbols: HTA6 \| histone H2A 6 \| chr5:24115605-24116144 REVERSE LENGTH=150