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Probe Details

Probe IDChipProbe Sequence (60 bp)Probe locationDifferentially Expressed
CUST_39449_PI390587928Hv_44K_v2CTTCTTGTTTTAGAAGTGCATCTTTGTGCGAGCGACTTTAAGATCATATTAAGGCATGTG-1GeneList: plum1
MasterList: None



Probe Values

3 dpa4 dpa5 dpa6 dpa7 dpa8 dpa
Normalized 0.5550.4640.4111.7272.8351.623
Raw 2.6943.2472.84634.66519.76912.336



Probe Sequence's BLAST hits in Barley Unigene Datasets

This probe has no hits to the blast databases


DatasetHitHit LengthE-valuePosition on Hit% IdentityMatchDirectionProbes on Sequence



Contig Sequence (592 bp)

>U35_48489 592 Hv_44K_v2
GGACACATGCCTTAATATGANTCTTAAAGTCGCTCGCACANAAGATGCACTTCTAAAACA
AGAAGGAAAGATAAGATGATAAAAGCTAACGTACATAAATGCACTTTTAAAAAGAGTCTC
CCTGCCAACCAGTCATACCGAATACTGAATACTCTTGATGATGGTCACAGCCATCAGTGT
TTATTCAGATACCTCACATAACGTCGTCATAGAATCTAAAACCTGAAGTACCAACGCAAC
AAAAACTCACTTACTCCTGATAGGTAGGCTGATTCATCTTGCACAGAAAGCTCTCCATAA
CTTTCCCTTGCACATTTGCCACCAGCTCTCTGTTTTGATCTTCTGCCTGTAGAATACAGG
GTGTGCGAATTCAGAGTCTGCACCCGCCATCAAGACACGATTCCTCACAGTTATTAGCAG
TTCATCTAAAGCAATGATTTTCCTCATAAGAGAGTTATTCCCGTCCTCAACGTCAATGCA
AAGTGAGAAGGCCTCTGTCTCTGCAACATTTGCGTCACCATCCTTAACCAAGGCTTCTTT
ATATGATCGCAATGCTTTTATAAGGAGCGATGAATCCTTTGCTGTGCTCTCA



Homology of Contig U35_48489 to Model Species (E-value threshold 1e-50)

Pseudo-peptide datasetHitHit lengthE-valueDescription
Rice v7None
Brachypodium v1_2None
Arabidopsis v10None