barSeed - Barley Seed Development Database

Probe CUST_39447_PI390587928

Source Contig U35_48492

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_39447_PI390587928	Hv_44K_v2	TTCTGTTACTGGGTAAGCTTGGCTTGATTCTTGGCCATATCATTATTTAATTTAGATGCT	0	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_57283.1	1577	7e-23	145 - 204	98	59 / 60	minus	ABC05219
JLOC1	JLOC1_37102.1	1474	4e-23	1400 - 1459	98	59 / 60	plus
Harvest21	ABC50319	466	3e-25	1 - 60	100	60 / 60	minus
Harvest35	U35_48492	466	3e-25	1 - 60	100	60 / 60	minus

Contig Sequence (466 bp)

>U35_48492 466 Hv_44K_v2
AGCATCTAAATTAAATAATGATATGGCCAAGAATCAAGCCAAGCTTACCCAGTAACAGAA
TAATGTATCGTCTGATCTCATGCGCCATGCATATTGGCTAAACTGAACTATCGGTCAGTA
AACAATCACAACTGCTGTGCAATATATACGCTGCAAGTAGCACAACCACCTCCGCCAGAA
AAGACATCGTCGGCTTGGAAGAAGAGGAGAACTCTGACGTCGCCGGCGATGGGCCAAACG
ACGTCCGGTCGAACCCGAGGTCGTACACCGACGTGCCGTTGGGGTAAAACAGCCCGTAGT
TCCTCTCGGACGCCGGCCCGGACTTCATGTTCTCGTTGAAGAGCGCGAAGACGAGCACGT
CCACGGGCACGTCCGGCCTGAGCGGCGTCCCCTGGCCCGCCGCGACCCTCTTCATCAGGT
TCCCGTTGTACATGGCGGCGTTCTGCACGGTGGCGCCCACCTCGTC

Homology of Contig U35_48492 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None