barSeed - Barley Seed Development Database

Probe CUST_39442_PI390587928

Source Contig U35_7401

barSeed

Links

Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_39442_PI390587928	Hv_44K_v2	CCTCGTGTTACCTTAATGAACCCTTTATGTACTGTGTCAGAGCAGTATATTTAGTTATTT	898	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_36391.2	2278	2e-24	2214 - 2273	100	60 / 60	plus	ABC17827
MLOC	MLOC_36391.4	2172	2e-24	2112 - 2171	100	60 / 60	plus	ABC17827
MLOC	MLOC_36391.1	2201	2e-24	2114 - 2173	100	60 / 60	plus	ABC17827
MLOC	MLOC_36391.3	2239	2e-23	2182 - 2239	100	58 / 58	plus	ABC17827
Harvest21	ABC17827	972	6e-22	899 - 956	98	57 / 58	plus	ABC17827
Harvest35	U35_7401	979	3e-25	899 - 958	100	60 / 60	plus

Contig Sequence (979 bp)

>U35_7401 979 Hv_44K_v2
GCTCGATTGGCTCAAGAAGCAGCGGAGTGTTCCGATGAAACATCAGGAAACCCCTGGACG
AAGCCATGCAAGGAGCACTTTTGGTTTAGCCACCCTAGGGCCGTCCTCCATCTGATCCAT
TTCATCTTGTTCCAGAACTCCTTTGAGATGGCATTTTTCTTCTGGGTCTTGGCAACATAT
GGGTTCGATTCATGCATCATGGAGAACAGATCATATGCCCTCCCCAGACTTGCTATTGGC
ATCATCGTCCAGGTGCTCTGCAGCTACAGCACCCTGCCGCTGTACGCCATTGTCACCCAC
ATGGGTGGCGACATCAAGCTGCAGGCGTTTGGCGAGCACGTACACGTGTCCGTGCACAGC
TGGGCGACGGACGTGAAGAAGAAGGCGACGTCGCTGCCGGCTCATCCGCACCCGCACCAG
CACCAACACCCGCACTCGCACCTCCGGATCCCGTTTCTCAACAAGAAGAGGCACAGCGCG
CGCGGCCCCGCAACCGAGGAGGCCGCGGCGGAGGCGAGGGCGACGGAGCAGCGAGCCGGG
AGCTCCAGCACGCCCACCGCGCAGCCGCAGCAGCGGGCGGACGACCTAGAGGAGATCGTG
ACCACCACGGAGGAGGACCATCGTCGTCGCAACGCCAGTTTCTCGTAGCTGCGTACATGC
TCGCGTTCGAAGTCCTAACGGAAGGCCGGGCCGCATAAGCCGCGTCTCGCTGTCGACGTC
GTCATCCGGCCAGCAGGCCCTAGGCCGAAGCGACGTAGTCGCCGCCGCCGACGTCGTCAG
CGTGGCGTGCTAGCTCTAAAACCTGCAGGTTAGCTAAACTACTTAGCACACTACCTGGGA
CATGTTGCTACTGTACTGGACCGTCTCCCATCTCAACAGCTTGAAACTTTGACAATTGCC
TCGTGTTACCTTAATGAACCCTTTATGTACTGTGTCAGAGCAGTATATTTAGTTATTTAC
TCCTAAAAAAAAAGAAAAA

Homology of Contig U35_7401 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os02g10350.1	508	2e-81	protein\|MLO domain containing protein, putative, expressed
Brachypodium v1_2	Bradi3g07150.1	497	1e-96
Arabidopsis v10	None