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Probe Details

Probe IDChipProbe Sequence (60 bp)Probe locationDifferentially Expressed
CUST_39441_PI390587928Hv_44K_v2GTAGTTGTTAATATCCCTGCGTTTGTTCAATATCATATCTCTACGTTCTGCTGTCTTAAA957GeneList: red
MasterList: None



Probe Values

3 dpa4 dpa5 dpa6 dpa7 dpa8 dpa
Normalized 1.4821.9491.6301.0300.3300.345
Raw 685.8711454.3191015.5341029.705111.983130.027



Probe Sequence's BLAST hits in Barley Unigene Datasets

DatasetHitHit LengthE-valuePosition on Hit% IdentityMatchDirectionProbes on Sequence
MLOCMLOC_53405.193732e-239227 - 928410058 / 58plus None
JLOC1JLOC1_34312.281321e-237954 - 801110058 / 58plus
JLOC1JLOC1_34312.193261e-239148 - 920510058 / 58plus
Harvest35U35_740210313e-25958 - 101710060 / 60plus



Contig Sequence (1031 bp)

>U35_7402 1031 Hv_44K_v2
GCTGCCAACTGCAGAACCATCTTCATTGCCAGAAGAGCAGTTTGACCCTGAGCCCGAGTG
TGATGGATTTGAGGAACCTGACTGTAGTTATGATGAAGATGCAAGCTACTTATTTGGTTC
TGGATCTGTGAAGAACAATGTACCCCATCTGGGTCATAAGGAGGAATACTATGAGCACAG
TGATGATCCATACATAAGTGGCATGCCCAAGCCCTCACTGAACGGAGAATCAGAAAGTGG
AGTGGCACTGCTGCCAGCTGAAGAAACACCAGCATTGACAAATGAGCACCTTAACTTCAA
GATGGAGGAACCCAGTCTTTACTTCGATATAGACATTAGTGACATGTCTGATACTGGATT
AATGGAGAACGACAATCTATCTAGCTTGCCCAAAGAGAATTATATGGAAACGTGGAAACA
AGGTGAGATTTCAATTGGCACGTCTGCAGCAAGGTCTCTAGGAGAATCTGCAGTTTGCTC
AGATGACAAGGTTCCTGGGTCAGGAGGAACCTGCCAAACTAGTGGGCGATGACGTATAGA
TGAAATTAGCACAAAGCTGCTGAGCTTCAAAATTTCGAGCGCAGTCAAGGGAAGTTACAT
TGCCCTGGACTCTGCCGACCCGAAGCAAGGCGACAACCCAAGTCCGTCTGCTTTACTAGG
GAACTGGGAGAATGTTCCTGCAACCGAAACAGATGATCCTGCAAAGCAAAACAGTGACTG
CTCGGTTCCAAAGGACTCCTCAAGGCGAGAGGCCACCGACGGATTGTAGATTGTTAGGCT
AGTGTTTTGGTTCCGTTCTTCAACCTTTGCCTGAAGGAAGTGATTATGTCTTCTAGGATG
CGAAATCGATATCCATGCTTGTCTTAAAACCATTACCGTTTAGTGTGTCCATGATAATAG
TAAGAGATTGATGCAATTGTCCATAATAGGTTGGTTTTTGCAGTCTATGAGAAAAGCGTA
GTTGTTAATATCCCTGCGTTTGTTCAATATCATATCTCTACGTTCTGCTGTCTTAAAAAA
AAAAAAAAAAA



Homology of Contig U35_7402 to Model Species (E-value threshold 1e-50)

Pseudo-peptide datasetHitHit lengthE-valueDescription
Rice v7None
Brachypodium v1_2None
Arabidopsis v10None