barSeed - Barley Seed Development Database

Probe CUST_3943_PI390587928

Source Contig U35_49347

barSeed

Links

Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_3943_PI390587928	Hv_44K_v2	CTTTCCCAAATTAAAGAGCCAAACCTGTCGAACAACTCAACTCCTACTACTCTGAAAAAA	10	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK357805	2039	7e-23	1515 - 1575	98	60 / 61	plus	ABC10853
MLOC	AK365891	2747	7e-23	1796 - 1856	98	60 / 61	plus	ABC10853
Harvest35	U35_49347	463	3e-25	11 - 70	100	60 / 60	minus

Contig Sequence (463 bp)

>U35_49347 463 Hv_44K_v2
TTTTTTTTTTTTTTTTCAGAGTAGTAGGAGTTGAGTTGTTCGACAGGTTTGGCTCTTTAA
TTTGGGAAAGCCACGCATGATAGTGCAGTTTGCAGGATGATGAATCACTTGACCTCTTTT
TTTGGCAGATGAATCAATCTACACTTAAAACTTACAAGATTCTTGAGATTAGGGCAAAAC
AGATCGCGCGGATGCATCTTCACGGCCACAGCAATAAAGCGGGGCCAAATAACTGGGCAC
CGTCATCAATGAGGACACGAAGCATCACGGGTCATCATGGGTCCCATGTGACTATCCTCC
CAAAAGAAAAGGGGCAACTAATTAACCACACTTTAAGGCTTTAATTTGCATTTGCAACCC
ATCAATCACATGCCCTCAACCAATCAACCTCCCTCTACCTGAATCACCACTGGAATTTTT
TCTTCTTTTCTTTTTTCGATCTAGTAAAAAAATAGTACTATTT

Homology of Contig U35_49347 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None