barSeed - Barley Seed Development Database

Probe CUST_39437_PI390587928

Source Contig U35_7407

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_39437_PI390587928	Hv_44K_v2	TTACTTTGATGGTAGTGATGTTTGGTGAGCTTGTCGATGCCAATTCGAGATGGTGTACGG	155	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_81103.1	1470	2e-24	747 - 806	100	60 / 60	plus	ABC17596
JLOC1	JLOC1_53964.1	611	8e-25	438 - 497	100	60 / 60	plus
Harvest21	ABC17596	693	3e-25	482 - 541	100	60 / 60	minus	ABC17596
Harvest35	U35_7407	696	3e-25	156 - 215	100	60 / 60	plus

Contig Sequence (696 bp)

>U35_7407 696 Hv_44K_v2
GAGGCGTGGACGTCCCTCGCGGTGTGGATCGGAGGCCCATGGCGACGAGAAAGTGCGCTC
CAGCGGCGTGTGATGCGGATCTGGTCTCCGGCTGTCGGTGGTCTTCGCGAGGTGCGGTTG
GCTGCTTCGGGTCTTGGTGCTTCTTCGTCGATGGATTACTTTGATGGTAGTGATGTTTGG
TGAGCTTGTCGATGCCAATTCGAGATGGTGTACGGCCGAGGTGGTGTGGGGCTTGGTGAA
AACAATGTCTTGGCCTCGTGCCGTGACTAGTGATGGCGACGGCTCTGGCCGTCCTTGACC
TTCTTGGAGGCATCGTTGCTTGTTCTACCACCCCTCGTGCGCGGATCTCATCGTTTCGGC
CTCTCTGGGGAAACCTTGATTTGTGATCGGATGGCGGCGCCTTGGTGTTGTATGCCCTCT
TGTGGGGCTTCGTCTTAGGAGCTTGGTGTCAGTGCGCAGGACCGTTGGATGGCGGTTGGT
GGCGTGTGTGGCGTCTAGACTTCTATGGGAACGATGATGGTGGGAGCGATGTCGGCGACG
CGGCAATGGTTTCGGTAGTCGACTCTTCTCGGCATGTCTAGGGTTTTGCCTCGGTTTGTT
TGTTGCTATGGAGTCGAAGCTGCGGCGGTGGGGGCCTACGATATATGATGACTAGATGCA
GGTAGCCCGTTCGGCGATCAAAAAAAAAAAAAAAAA

Homology of Contig U35_7407 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None