barSeed - Barley Seed Development Database

Probe CUST_39432_PI390587928

Source Contig U35_7413

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_39432_PI390587928	Hv_44K_v2	TCCCTGTGGTATTCTCTTTAGCAGGAACACCTTTTGAATGCATTATTGCCCATTTAAAAA	572	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_72589.2	832	9e-22	77 - 131	100	55 / 55	minus	ABC11368 ABC16623
MLOC	MLOC_72589.3	932	9e-22	77 - 131	100	55 / 55	minus	ABC11368 ABC16623
MLOC	MLOC_72589.1	809	9e-22	167 - 221	100	55 / 55	minus	ABC11368 ABC16623
JLOC1	JLOC1_48284.2	799	5e-22	566 - 620	100	55 / 55	plus
JLOC1	JLOC1_48284.1	895	5e-22	662 - 716	100	55 / 55	plus
Harvest21	ABC16623	647	3e-25	573 - 632	100	60 / 60	plus	ABC16623
Harvest35	U35_7413	647	3e-25	573 - 632	100	60 / 60	plus

Contig Sequence (647 bp)

>U35_7413 647 Hv_44K_v2
GCGACGAGCAGCAGCCCCCACGGAGCGACGCTTCAGCGGCAGGATTGTTGGAAGGGAGTC
CTGTTAGCTACACAATGAACAAGGGGAAGATTTTCAAGTTGGCAAAGGGATTTAGAGGAA
GGGCGAAAAATTGCATAAGGATAGCACGAGAGAGGGTTGAGAAAGCCTTGCAATATTCCT
ACAGGGATAGGCGTAACAAGAAGAGAGACATGCGGTCCCTATGGATTGAGCGCATCAATG
CTGGTACACGACTGCATGGGGTGAACTATGGCAACTTCATGCATGGACTGATGAAGGAGA
ACATCCAACTGAACAGGAAGGTGCTCTCGGAGCTGTCAATGCATGAGCCGTACAGCTTCA
AGGCACTTGTTGATGTATCTCGCACTGCATTTCCAGGGAACAGGCCACCTGCCCAAAAGG
AAGGTCTAGCAGCTATTCTGTGAAACAGCTTGCCCAATAAATCACTGATGTCATGCTGAT
CTTCCATTTTCCCTTCATTCCAACTGAAAGTTATTGCCAGTCTACCAATATCTTGTATCC
GGGAGTTGACTCATGTAATGTCTTTTCACCATTCCCTGTGGTATTCTCTTTAGCAGGAAC
ACCTTTTGAATGCATTATTGCCCATTTAAAAAGAAAAAAAAAAAAAA

Homology of Contig U35_7413 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os01g53280.1	123	8e-81	protein\|50S ribosomal protein L20, putative, expressed
Brachypodium v1_2	Bradi2g49030.2	123	8e-83
Arabidopsis v10	AT1G16740.1	126	6e-68	Ribosomal protein L20 \| chr1:5727773-5728950 FORWARD LENGTH=126