barSeed - Barley Seed Development Database

Probe CUST_3942_PI390587928

Source Contig U35_49348

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_3942_PI390587928	Hv_44K_v2	ATGCTCTAGCTGTCCGGCAACATAAAATGTATCCTGTCAGCTTTCTTTCTGCCGACATAT	27	GeneList: turquoise MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.677	1.559	1.294	0.805	0.338	0.331
Raw	3054.473	4530.970	3223.080	3176.432	465.954	496.999

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_73858.1	4942	2e-24	4707 - 4766	100	60 / 60	plus	ABC16509 ABC16521 ABC17771
JLOC1	JLOC1_49194.1	5049	8e-25	4730 - 4789	100	60 / 60	plus
Harvest35	U35_49348	309	3e-25	28 - 87	100	60 / 60	minus

Contig Sequence (309 bp)

>U35_49348 309 Hv_44K_v2
TTTTTTTTTTTTTTTTTGTTTTTTTTTATATGTCGGCAGAAAGAAAGCTGACAGGATACA
TTTTATGTTGCCGGACAGCTAGAGCATATCATATCATTATTATTGGATACAGGTGAATAA
TTGCAGAAGAATCATATAGCTCAGCTCAACTCAGCTAACTAGTGAAACATGACCATGCTC
GCACACAGGCAGCGCCAATACAGGAACTGTCCATTGAGAATAAGTAGCAGAAACATTCCA
TCTCAACTCAAGAACTGAAAACTGCTGCCTGTTACTCGAGTTCTTCCCACGCGATAATTT
CAGACATAA

Homology of Contig U35_49348 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None