barSeed - Barley Seed Development Database

Probe CUST_39421_PI390587928

Source Contig U35_7424

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_39421_PI390587928	Hv_44K_v2	CCGCTATACAGCGTAAGTTTCTTGTCTACTAATGCAAGAGTGCTATATTATTTTTGACAA	1400	GeneList: blue MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.783	1.546	1.351	0.827	0.256	0.282
Raw	571.525	784.057	592.921	589.719	62.096	74.839

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_65243.1	1767	2e-23	1710 - 1767	100	58 / 58	plus	ABC15873
JLOC1	JLOC1_42919.3	1606	4e-23	1499 - 1558	98	59 / 60	plus
JLOC1	JLOC1_42919.2	1532	4e-23	1425 - 1484	98	59 / 60	plus
JLOC1	JLOC1_42919.1	1553	4e-23	1446 - 1505	98	59 / 60	plus
Harvest21	ABC15873	1475	3e-25	1401 - 1460	100	60 / 60	plus	ABC15873
Harvest35	U35_7424	1475	3e-25	1401 - 1460	100	60 / 60	plus

Contig Sequence (1475 bp)

>U35_7424 1475 Hv_44K_v2
TCGGCGAGGCCGACCCCAGCAGGAGGAAGGAGAAGAAGAAGAAGAAGCAGCGGCGCAAGG
AGAGGAGGAAGAAGCAGCGCAAGGAGGACGCCGCCGCCGCCCCTGAGGAGGAGCCTCAGG
TTGCTGGAGCCCAGGAAGGACAAACCGGGACAGCAGAATCAGTGCTCATCCAAAATGGCG
TTGATGTCCCTGTATCCGACAACACAGTTCTGCGGAAGCTTCTTCGTATACCAAGATACT
TTGATCCTGGGGAAACTATATTGGAGACTTGCTTTAACTGTGGTGAAGAAGGTCATGTAG
CGGTGAACTGCCCAATGGAGAAGCGGAAGAAGCCTTGCTTCGTTTGTGGATTGTTCGGAC
ACAATGCGAAGCAGTGCACGCAGGGTCAAGAGTGTTTCATCTGCAAAAAAGGAGGTCATA
TGGCGAAAGACTGCCCTGACAAGCACACAAAGATTACTCAGCAGTGCACCGCATTATGCT
TGAGATGCGGAGAAACAGGCCATGATATGTTTGGATGTTCCAATGATTATCCACTGGATG
ATGTCAAGGAAATAAAATGCTATGTGTGCAAGCAGAATGGTCACCTCTGTTGTACCGACT
TCGCTGATAGTTGTTCAAAAGAAGTTACTTGTTATAACTGTGCCCAATCTGGTCATACTG
GTTTGGGATGTGCCAAGCAACGTAGGGAGACGAGTGTTGCGACAACTCCGACCTTGTGCT
ACAAATGTGGCGAAGATGGTCACTTTGCACGTGGCTGCACAAATAGTGCTAAGCCCGGTC
GGTTCAAGGGCGAGTTGTCATCGCATAGTCGTCGAAAGGACAGATGGAAAAACGACTCTG
GCCCTAGATCAGCTCCTCATGGTTCTCACAAAAGAAAAAGCCCCTTATTCGATGATAGAT
GGGAGACACCTCATGGTAGTGGTAAATCCAGAGCCAGGGGTGGTTGGATTCCTGAGGACC
ATGACGATCTGCCATCTAAGAAGTACAAAGGCAATGGGTGGGACTCCCAGTCTACTCCTA
AGAAGCACTACAATAATCACCACCAGCGCTCCTCAGGCGGTGACTATTCAAGTCCTCAAG
GACAAGATTTTTCATGGCACAATGCACAGTATTCGACAAGTGCGAGGAAACATGGGTCTT
CTTCATCGTCAAGATTTGCCAGCAACACCCATCACCGCTTTGAAAGAAGTTAGGCTGGAG
CTTACCTTTGGTTTTGTTGTTCATTTGACAGTAGGCCCCTTAGGGATGTACTCTGCCTGT
AATACCCGGTTCCCTGAAAGAGCTGTTTTCTGTATCTTCAGAGTTGTATACGTTTTGTCC
ATTCCTGGTCTGGGCATGTTTTGTGTTGCACTTCCAATGCCTGTCCACTGCAAACACGGC
ATGTCACTCTGCACTCTGCCCCGCTATACAGCGTAAGTTTCTTGTCTACTAATGCAAGAG
TGCTATATTATTTTTGACAAAAAAAAAAAAAAAAA

Homology of Contig U35_7424 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os11g36480.2	296	3e-137	protein\|zinc knuckle domain containing protein, expressed
Brachypodium v1_2	Bradi4g15700.1	388	0.0
Arabidopsis v10	AT3G43590.1	551	3e-72	zinc knuckle (CCHC-type) family protein \| chr3:15509753-15512255 FORWARD LENGTH=551