barSeed - Barley Seed Development Database

Probe CUST_39418_PI390587928

Source Contig U35_7428

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_39418_PI390587928	Hv_44K_v2	ACTACTCTTATGCTGCTGATATTTGGAGTCTTGGACTAACGATATTGGAGTGTGCTACTG	1073	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK364882	2719	2e-24	991 - 1050	100	60 / 60	plus	ABC18528 ABC37467 ABC44309
MLOC	MLOC_51567.1	1860	2e-24	1148 - 1207	100	60 / 60	plus	None
MLOC	MLOC_51567.2	1876	2e-24	1164 - 1223	100	60 / 60	plus	None
MLOC	MLOC_51567.3	1815	2e-24	1106 - 1165	100	60 / 60	plus	None
MLOC	MLOC_51567.4	1750	2e-24	1135 - 1194	100	60 / 60	plus	None
MLOC	MLOC_51567.5	1734	2e-24	1119 - 1178	100	60 / 60	plus	None
JLOC1	JLOC1_32952.6	1790	8e-25	938 - 997	100	60 / 60	plus
JLOC1	JLOC1_32952.5	1749	8e-25	995 - 1054	100	60 / 60	plus
JLOC1	JLOC1_32952.4	1811	8e-25	1057 - 1116	100	60 / 60	plus
JLOC1	JLOC1_32952.3	1891	8e-25	1039 - 1098	100	60 / 60	plus
JLOC1	JLOC1_32952.2	1909	8e-25	1155 - 1214	100	60 / 60	plus
JLOC1	JLOC1_32952.1	1925	8e-25	1171 - 1230	100	60 / 60	plus
Harvest21	ABC16171	1132	1e-24	1074 - 1132	100	59 / 59	plus
Harvest35	U35_7428	1133	3e-25	1074 - 1133	100	60 / 60	plus

Contig Sequence (1133 bp)

>U35_7428 1133 Hv_44K_v2
GCTTCCCTCCTTCCTCCCCCGTCGCCGGGCTCGCCGCCGCCTCCTCCTAACCGTCGCGCC
GCCCCTTCGCGTCCTCCGCTCTCCGCCCGTACAGATCCGTCCGGCGAGCATCCCCGGCCG
CTCCTCCCGACGGGCTCGCCGCCACCTACAGGACCTCACCGCCCGCCCTCCTCACCGCGA
GGCGAACCGAGGTCCGCCGCCCAAGCTCCAATTTTTCGCCTGGGATTCTCTACCCAACCG
AAGAGACCGTGATTCCTCGCTGCTTGGGTTATTTTGATTGACAGTCCCCATGGCGGGGCT
AGAGGAGTTGAAGAAGAAGCTGCAGCCGTTGCTGTTCGACGACTCGGACAAGGGCGGCGT
CAGCACCAGGGTTCCCTTCCCCGAGGACACATGCGATTCCTATGTGGTGTCTGATGGTGG
AACGATAAATTTACTGAGTAGATCGTTTGGTGAGTATAACATCAATGAGCATGGCTTTCA
TAAGCGAAGTACTGGCCCAGAAGAGCCAGATACTGGTGAGAAGGCATACCGATGTGCATC
TGAAGACATGCATATATTTGGTCCCATTGGAAATGGAGCAAGCAGTGTCGTGCAGAGAGC
TATTTTCATACCAGTTCATCGAATTCTGGCCTTGAAGAAGATAAACATATTTGAGAAGGA
GAAAAGGCAACAAATTCTTAATGAGATGAGAACATTATGTGAAGCAAGTTGCTATCCTGG
TTTAGTTGAATTCCAGGGTGCATTTTACATGCCTGATTCTGGACAAATAAGCATTGCCCT
TGAATACATGGATGGTGGCTCCTTAGCAGATGTTATAAAAGTCAAGAAATCAATACCAGA
GCCGGTTCTTGCACATATGCTACTGAAAGTATTACTTGGCCTGAAGTACTTGCATGAGGC
AAGACACCTAGTGCATAGAGATCTAAAGCCAGCGAATATATTGGTAAACCTCAAGGGAGA
GGCAAAAATTACAGACTTTGGCGTAAGTGCTGGTTTGGACAATACAATGGCTATGTGTGC
TACCTTTGTAGGCACCGTGACATATATGTCACCTGAGAGAATTCGTAATGAGAACTACTC
TTATGCTGCTGATATTTGGAGTCTTGGACTAACGATATTGGAGTGTGCTACTG

Homology of Contig U35_7428 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os06g27890.1	524	7e-167	protein\|STE_MEK_ste7_MAP2K.8 - STE kinases include homologs to sterile 7, sterile 11 and sterile 20 from yeast, expressed
Brachypodium v1_2	Bradi1g41860.1	524	1e-167
Arabidopsis v10	AT5G40440.1	520	3e-114	\| Symbols: ATMKK3, MKK3 \| mitogen-activated protein kinase kinase 3 \| chr5:16182149-16184513 FORWARD LENGTH=520