barSeed - Barley Seed Development Database

Probe CUST_39417_PI390587928

Source Contig U35_7429

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_39417_PI390587928	Hv_44K_v2	CGTGTTTGGTGTCGTGTTCGTGTTAGTGAAGATAAGATGAACAGTGAAGTAATAAATTTT	691	GeneList: brown MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.556	1.726	1.048	0.926	0.411	0.338
Raw	2022.330	3570.053	1855.980	2606.174	407.316	360.165

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK356730	1126	3e-22	963 - 1018	100	56 / 56	plus	None
MLOC	MLOC_55023.1	818	3e-22	51 - 106	100	56 / 56	minus	None
JLOC1	JLOC1_35460.1	1018	1e-22	713 - 768	100	56 / 56	plus
Harvest35	U35_7429	794	3e-25	692 - 751	100	60 / 60	plus

Contig Sequence (794 bp)

>U35_7429 794 Hv_44K_v2
GCTTCGCCTTCTACGGCGCGTACCACAGCAACCCGGTCAACGTCTTCATCCACGCGCTCT
TCGTCTGGCCCATCTTCCTCACCGCCCTCCTGCTCCTCCACCTCACCGCCCCGTTCCCGC
GCGCCGCCGCGGTCTTCACCGCCGTCTACGGGGCCTTCTACGTCTCCCTCGACCGCCGCT
CCGGCGCCCTCGCCGCCGTCCTCTGCCTCCTCTGCTGGGGCGCCAGCTCCGCCCTCGCCG
CCCGCCTCGGCTTCTCCCTCGGATGGAAGGTGGTATTGGTAGCTCAGCTGTTCTGTTGGA
CTATGCAATTCGTTGGCCATGGAGTTTTTGAGAAGCGGGCACCTGCTCTAGTTGACAATC
TCGCCCAGGCTTTGCTGATGGCCCCATATTTCGTGCTTCTAGAGATTCTTCACAAGTTTG
CTGCCTACGAACCGTATCCTGGCTTTCATGCCAATGTTCAGAAGCTGATTGACGCCAAGC
GCAAGGAGTGGGCGGACAAGAAAGCGAAGAAGATGTCATGAGACGTGACCGAGAACTCCT
GATGAAAGATGGAAGATGAAAGATGAGAAGATGGTAACAGCGAAGGTGCGAGTGATCTCT
ATGAAGATAAACAAAACTGTAGACTAATATTTAATCCTGAGATGTGACATGCTTGTTGTA
TTACATTACATCAGTGTGAGGTGAGACACGCCGTGTTTGGTGTCGTGTTCGTGTTAGTGA
AGATAAGATGAACAGTGAAGTAATAAATTTTTTTAATACATTAGTGTGAGATGAGACAAA
AAAAAAAAAAAAAA

Homology of Contig U35_7429 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os02g36870.1	188	2e-83	protein\|YGL010w, putative, expressed
Brachypodium v1_2	Bradi3g46890.1	185	1e-86
Arabidopsis v10	None